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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.786788 (62 seq.)
>W1710797265
LJSX01000007
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
138592
138665
+
Gln
CTG
[ENA]
¡û
>W1710873091
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
67235
67162
-
Gln
CTG
[ENA]
¡û
>W1710873236
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
33329
33256
-
Gln
CTG
[ENA]
¡û
>W1710874330
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
47117
47044
-
Gln
CTG
[ENA]
¡û
>W1710874436
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
33977
33904
-
Gln
CTG
[ENA]
¡û
>W1710874483
LMNQ01000014
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
45436
45509
+
Gln
CTG
[ENA]
¡û
>W1710874574
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
16842
16769
-
Gln
CTG
[ENA]
¡û
>W1710878289
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
114193
114120
-
Gln
CTG
[ENA]
¡û
>W131051718
AMXU01000014
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
47176
47103
-
Gln
CTG
[ENA]
¡û
>W1711078684
LSNC01000046
Alphaproteobacteria
Methylorubrum populi [LSNC]
44225
44298
+
Gln
CTG
[ENA]
¡û
>W131222254
AUBC01000022
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
6234
6307
+
Gln
CTG
[ENA]
¡û
>W1711571772
MNAO01000413
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2717
2644
-
Gln
CTG
[ENA]
¡û
>C171092168
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
2266249
2266176
-
Gln
CTG
-
¡û
>C171115178
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
813538
813611
+
Gln
CTG
-
¡û
>WENV180353951
OBLQ011225432
[OBLQ] soil metagenome; soil
118
45
-
Gln
CTG
[ENA]
¢þ
>w001826
AAAP01003110
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1324
1254
-
Gln
CTG
[ENA]
¡û
>W08002413
ABEX01000010
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
162349
162279
-
Gln
CTG
[ENA]
¡û
>WENV181228050
OFDN01129959
[OFDN] hot springs metagenome; Water
267
194
-
Gln
CTG
[ENA]
¢þ
>WENV181234043
OFET01001128
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
8698
8771
+
Gln
CTG
[ENA]
¢þ
>WENV181234368
OFEU01000071
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
138554
138627
+
Gln
CTG
[ENA]
¢þ
>W141148471
AWXZ01000006
Alphaproteobacteria
Lutibaculum baratangense AMV1 [AWXZ]
618
545
-
Gln
CTG
[ENA]
¡û
>C08006500
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4837976
4838049
+
Gln
CTG
[Ensembl]
¡û
>C08006647
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5197229
5197302
+
Gln
CTG
[Ensembl]
¡û
>WENV183627767
OOGL01042030
[OOGL] marine metagenome; sea ice
231
304
+
Gln
CTG
[ENA]
¢þ
>WENV183746550
POYE01006166
[POYE] biofilm metagenome; steel pipe from biofilm reactor
368
441
+
Gln
CTG
[ENA]
¢þ
>ENV08001914
ABOK01009227
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
84
11
-
Gln
CTG
[ENA]
¡û
>ENV08001919
ABOK01017442
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
90
17
-
Gln
CTG
[ENA]
¡û
>WENV170645733
JPYU01023622
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
441
368
-
Gln
CTG
[ENA]
¢þ
>WENV170680885
LFEF01029879
[LFEF] freshwater metagenome; waterbloom
790
717
-
Gln
CTG
[ENA]
¢þ
>WENV170683294
LFIK01008403
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6843
6916
+
Gln
CTG
[ENA]
¢þ
>C181000360
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
5019093
5019166
+
Gln
CTG
-
¡û
>C181175647
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
5028766
5028839
+
Gln
CTG
-
¡û
>C181227877
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
976875
976802
-
Gln
CTG
-
¡û
>W09106830
ABEC01000001
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
356964
357037
+
Gln
CTG
[ENA]
¡û
>W09107190
ABFR01000008
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
90321
90394
+
Gln
CTG
[ENA]
¡û
>C09107430
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5003234
5003307
+
Gln
CTG
[Ensembl]
¡û
>C09107516
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5288636
5288709
+
Gln
CTG
[Ensembl]
¡û
>C09107617
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4901299
4901372
+
Gln
CTG
[Ensembl]
¡û
>W1910547477
FZNU01000014
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
78224
78297
+
Gln
CTG
[ENA]
¡û
>W1810658561
QJJJ01000025
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
57743
57816
+
Gln
CTG
[ENA]
¡û
>W1810706693
QMKH01000007
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
167330
167257
-
Gln
CTG
[ENA]
¡û
>SRA1014548
SRR023845.193770
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
84
11
-
Gln
CTG
[SRA]
>SRA1015924
SRR023846.264539
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
234
+
Gln
CTG
[SRA]
>C161004976
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4688027
4688100
+
Gln
CTG
[Ensembl]
¡û
>W121010673
AGJK01000058
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
25644
25717
+
Gln
CTG
[ENA]
¡û
>W1610042983
BAZM01001913
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
268
341
+
Gln
CTG
[ENA]
¡û
>W1610043194
BAZP01002295
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
332
259
-
Gln
CTG
[ENA]
¡û
>W1610516207
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2358918
2358991
+
Gln
CTG
[ENA]
¡û
>W1610661222
LJSX01000007
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
138592
138665
+
Gln
CTG
[ENA]
¡û
>W1610735437
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
67235
67162
-
Gln
CTG
[ENA]
¡û
>W1610735582
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
33329
33256
-
Gln
CTG
[ENA]
¡û
>W1610736676
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
47117
47044
-
Gln
CTG
[ENA]
¡û
>W1610736782
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
33977
33904
-
Gln
CTG
[ENA]
¡û
>W1610736829
LMNQ01000014
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
45436
45509
+
Gln
CTG
[ENA]
¡û
>W1610736920
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
16842
16769
-
Gln
CTG
[ENA]
¡û
>W1610740635
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
114193
114120
-
Gln
CTG
[ENA]
¡û
>W1610917594
LSNC01000046
Alphaproteobacteria
Methylorubrum populi [LSNC]
44225
44298
+
Gln
CTG
[ENA]
¡û
>W1710040143
BAZM01001913
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
268
341
+
Gln
CTG
[ENA]
¡û
>W1710040354
BAZP01002295
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
332
259
-
Gln
CTG
[ENA]
¡û
>W1710501498
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2358918
2358991
+
Gln
CTG
[ENA]
¡û
>W1710567571
FOSV01000040
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
18426
18499
+
Gln
CTG
[ENA]
¡û
>W1710607232
FWZX01000002
Alphaproteobacteria
Tistlia consotensis [FWZX]
329684
329611
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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