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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787020 (46 seq.)
>W1710863683
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900818
900745
-
Cys
GCA
[ENA]
¡û
>W1710864915
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
540318
540245
-
Cys
GCA
[ENA]
¡û
>W1710874049
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011509
1011438
-
Cys
GCA
[ENA]
¡û
>W1710874870
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123405
123476
+
Cys
GCA
[ENA]
¡û
>W1710880885
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749589
749516
-
Cys
GCA
[ENA]
¡û
>W131219705
ATYU01000001
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
120435
120364
-
Cys
GCA
[ENA]
¡û
>W131224910
AUDD01000008
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
96549
96478
-
Cys
GCA
[ENA]
¡û
>W131227905
AUFN01000014
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
46041
46114
+
Cys
GCA
[ENA]
¡û
>C171044675
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
930920
930991
+
Cys
GCA
-
¡û
>C171092754
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
325146
325075
-
Cys
GCA
-
¡û
>C171130933
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
719613
719684
+
Cys
GCA
-
¡û
>WENV180000048
CZKA01000074
[CZKA] metagenome; liquid mineral medium
2059
2130
+
Cys
GCA
[ENA]
¢þ
>WENV180030861
FTJN01213556
[FTJN] metagenome; soil
130
59
-
Cys
GCA
[ENA]
¢þ
>WENV180357176
OBNM01044841
[OBNM] marine metagenome; none
309
238
-
Cys
GCA
[ENA]
¢þ
>WENV181311750
OFJB01010808
[OFJB] sludge metagenome; sludge
710
639
-
Cys
GCA
[ENA]
¢þ
>WENV183709051
PDWI01023343
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
123
194
+
Cys
GCA
[ENA]
¢þ
>WENV183712644
PDWI01108229
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1451
1522
+
Cys
GCA
[ENA]
¢þ
>C191030079
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
1922250
1922321
+
Cys
GCA
-
¡û
>C191036543
CP025570
Actinomycetota
Acidipropionibacterium jensenii JS280 [CP025570]
1552522
1552593
+
Cys
GCA
-
¡û
>C191036612
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
1579858
1579787
-
Cys
GCA
-
¡û
>C191073497
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
1945378
1945307
-
Cys
GCA
-
¡û
>C191180453
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
1584970
1585041
+
Cys
GCA
-
¡û
>C191180516
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
2681762
2681833
+
Cys
GCA
-
¡û
>C191211306
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
409639
409710
+
Cys
GCA
-
¡û
>W1910141221
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
823229
823158
-
Cys
GCA
[ENA]
¡û
>ENV09003586
ADGO01095698
Compost metagenome contig00001
250
321
+
Cys
GCA
[ENA]
¡û
>C161051576
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
2964952
2965023
+
Cys
GCA
-
¡û
>C161071850
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
632279
632350
+
Cys
GCA
[Ensembl]
¡û
>C161082882
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
3086334
3086263
-
Cys
GCA
[Ensembl]
¡û
>W1610048765
BBEJ01001111
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
331
258
-
Cys
GCA
[ENA]
¡û
>W1610052804
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2145
2218
+
Cys
GCA
[ENA]
¡û
>W1610052807
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2980
3053
+
Cys
GCA
[ENA]
¡û
>W1610068474
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10967
11040
+
Cys
GCA
[ENA]
¡û
>C131003883
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
1744432
1744361
-
Cys
GCA
[Ensembl]
¡û
>W1610726029
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900818
900745
-
Cys
GCA
[ENA]
¡û
>W1610727261
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
540318
540245
-
Cys
GCA
[ENA]
¡û
>W1610736395
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011509
1011438
-
Cys
GCA
[ENA]
¡û
>W1610737216
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123405
123476
+
Cys
GCA
[ENA]
¡û
>W1610743231
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749589
749516
-
Cys
GCA
[ENA]
¡û
>W1710045237
BBEJ01001111
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
331
258
-
Cys
GCA
[ENA]
¡û
>W1710049182
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2145
2218
+
Cys
GCA
[ENA]
¡û
>W1710049185
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2980
3053
+
Cys
GCA
[ENA]
¡û
>W1710065847
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10967
11040
+
Cys
GCA
[ENA]
¡û
>W1710083197
BDJE01000017
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
104658
104585
-
Cys
GCA
[ENA]
¡û
>W1710083322
BDJG01000024
Actinomycetota
Nocardioides sp. PD653 [BDJG]
118127
118200
+
Cys
GCA
[ENA]
¡û
>W1710512555
FMZM01000012
Actinomycetota
Nocardioides lianchengensis [FMZM]
60819
60890
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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