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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787495 (21 seq.)
>W1710869647
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
295906
295979
+
Gly
TCC
[ENA]
¡û
>C171057754
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5083719
5083646
-
Gly
TCC
-
¡û
>C014945
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2750528
2750455
-
Gly
TCC
[Ensembl]
¡û
>WENV183667547
ORJL010659195
[ORJL] groundwater metagenome; groundwater
24470
24397
-
Gly
TCC
[ENA]
¢þ
>WENV183679697
ORMF010096426
[ORMF] groundwater metagenome; groundwater
4089
4016
-
Gly
TCC
[ENA]
¢þ
>WENV183689087
ORMF011388108
[ORMF] groundwater metagenome; groundwater
1331
1258
-
Gly
TCC
[ENA]
¢þ
>WENV183690923
ORMF011672426
[ORMF] groundwater metagenome; groundwater
94
21
-
Gly
TCC
[ENA]
¢þ
>WENV170706709
LNAP01005855
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1292
1365
+
Gly
TCC
[ENA]
¢þ
>WENV171003695
NNBV01000276
[NNBV] plant metagenome; symbiotic tissue sample KVS11
72024
72097
+
Gly
TCC
[ENA]
¢þ
>C191014037
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1932425
1932352
-
Gly
TCC
-
¡û
>C191152090
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
4058742
4058815
+
Gly
TCC
-
¡û
>W09102987
AAIS01000001
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
1008928
1009001
+
Gly
TCC
[ENA]
¡û
>W1910840141
MZXT01000016
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
394961
394888
-
Gly
TCC
[ENA]
¡û
>W1910840184
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
2511003
2510930
-
Gly
TCC
[ENA]
¡û
>W1910847641
NBDP01000005
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
193022
192949
-
Gly
TCC
[ENA]
¡û
>W1810676910
QKMI01000012
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
4231
4304
+
Gly
TCC
[ENA]
¡û
>C161070702
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1857314
1857241
-
Gly
TCC
[Ensembl]
¡û
>W1610731993
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
295906
295979
+
Gly
TCC
[ENA]
¡û
>W1710538944
FNUY01000003
Alphaproteobacteria
Bosea lathyri [FNUY]
537457
537530
+
Gly
TCC
[ENA]
¡û
>W1710564926
FOQV01000006
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
274931
275004
+
Gly
TCC
[ENA]
¡û
>W1710568452
FOTP01000011
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
16579
16506
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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