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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787596 (58 seq.)
>W1710821514
LKTL01000050
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
353
280
-
Gly
TCC
[ENA]
¡û
>W1711027104
LRDC01000030
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
42303
42230
-
Gly
TCC
[ENA]
¡û
>W1711273454
LZFV01000011
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
562
489
-
Gly
TCC
[ENA]
¡û
>W1711340572
MCBT01000019
Gammaproteobacteria
Shewanella colwelliana [MCBT]
1456
1383
-
Gly
TCC
[ENA]
¡û
>W1711624522
MPHJ01000032
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
850
777
-
Gly
TCC
[ENA]
¡û
>W1711624633
MPHK01000041
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
654
581
-
Gly
TCC
[ENA]
¡û
>C171033335
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
384527
384600
+
Gly
TCC
-
¡û
>C171108595
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4765482
4765409
-
Gly
TCC
-
¡û
>C021936
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
151973
152046
+
Gly
TCC
[Ensembl]
¡û
>C022650
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
160644
160717
+
Gly
TCC
[Ensembl]
¡û
>w021141
AAVJ01000081
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
260
190
-
Gly
TCC
[ENA]
¡û
>w020046
AAUO01000078
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
2838
2768
-
Gly
TCC
[ENA]
¡û
>W08005725
ABIC01000092
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
135
208
+
Gly
TCC
[ENA]
¡û
>C08010571
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
5303411
5303341
-
Gly
TCC
[Ensembl]
¡û
>C08010117
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
191818
191891
+
Gly
TCC
[Ensembl]
¡û
>WENV182560301
OJDT01032629
[OJDT] seawater metagenome; Sea water
117
190
+
Gly
TCC
[ENA]
¢þ
>WENV182577415
OJGE01002682
[OJGE] seawater metagenome; Sea water
1101
1028
-
Gly
TCC
[ENA]
¢þ
>C08009867
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
5043684
5043614
-
Gly
TCC
[Ensembl]
¡û
>W141276851
JAEC01000049
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
192
119
-
Gly
TCC
[ENA]
¡û
>W141277092
JAEH01000082
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
1050
977
-
Gly
TCC
[ENA]
¡û
>C08010763
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
5675102
5675032
-
Gly
TCC
[Ensembl]
¡û
>WENV183053741
OLGQ01001919
[OLGQ] seawater metagenome; Sea water
63
136
+
Gly
TCC
[ENA]
¢þ
>WENV183058295
OLHP01002628
[OLHP] seawater metagenome; Sea water
1503
1430
-
Gly
TCC
[ENA]
¢þ
>WENV183058413
OLHQ01012829
[OLHQ] seawater metagenome; Sea water
118
191
+
Gly
TCC
[ENA]
¢þ
>WENV170022246
BCQK01002751
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
441
368
-
Gly
TCC
[ENA]
¢þ
>WENV170023706
BCQL01001445
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
3724
3797
+
Gly
TCC
[ENA]
¢þ
>C181061280
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
149355
149428
+
Gly
TCC
-
¡û
>C181214256
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
305567
305494
-
Gly
TCC
-
¡û
>C191117173
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
404176
404249
+
Gly
TCC
-
¡û
>C191148696
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
2595700
2595773
+
Gly
TCC
-
¡û
>C191173190
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2384140
2384213
+
Gly
TCC
-
¡û
>C191185868
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
4458086
4458013
-
Gly
TCC
-
¡û
>C191187165
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
150278
150351
+
Gly
TCC
-
¡û
>W09104518
AALS01000076
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
1029
956
-
Gly
TCC
[ENA]
¡û
>C09109813
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2072701
2072774
+
Gly
TCC
[Ensembl]
¡û
>W1910676741
MCTV01000034
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
17245
17172
-
Gly
TCC
[ENA]
¡û
>W1910676913
MCTY01000039
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
376
303
-
Gly
TCC
[ENA]
¡û
>W1910677485
MCUF01000042
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
454
381
-
Gly
TCC
[ENA]
¡û
>W1910679475
MCVG01000032
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
4647
4720
+
Gly
TCC
[ENA]
¡û
>W1910679678
MCVI01000031
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
376
303
-
Gly
TCC
[ENA]
¡û
>W1911551635
OXJV01000004
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
26237
26164
-
Gly
TCC
[ENA]
¡û
>W1911710066
QPQT01000014
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
118826
118753
-
Gly
TCC
[ENA]
¡û
>W1911710167
QPQU01000027
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
4089
4162
+
Gly
TCC
[ENA]
¡û
>W1810005535
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
1950764
1950837
+
Gly
TCC
[ENA]
¡û
>W1810155874
PJAZ01000001
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
4109
4182
+
Gly
TCC
[ENA]
¡û
>W1810156210
PJBE01000010
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
32379
32306
-
Gly
TCC
[ENA]
¡û
>W1810156722
PJBL01000031
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
32372
32299
-
Gly
TCC
[ENA]
¡û
>W1810156755
PJBM01000118
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
15562
15489
-
Gly
TCC
[ENA]
¡û
>W1810157731
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
4146
4219
+
Gly
TCC
[ENA]
¡û
>W1810157852
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3437727
3437800
+
Gly
TCC
[ENA]
¡û
>C10112864
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
4773592
4773519
-
Gly
TCC
[Ensembl]
¡û
>W1511302155
JPII01000032
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
931
858
-
Gly
TCC
[ENA]
¡û
>W1511366828
JSFF01000048
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
341
268
-
Gly
TCC
[ENA]
¡û
>W1610460616
FKJK01000014
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
5625
5698
+
Gly
TCC
[ENA]
¡û
>W1610685476
LKTL01000050
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
353
280
-
Gly
TCC
[ENA]
¡û
>W1610875216
LRDC01000030
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
42303
42230
-
Gly
TCC
[ENA]
¡û
>W1611032803
LZFV01000011
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
562
489
-
Gly
TCC
[ENA]
¡û
>W1710460180
FKJK01000014
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
5625
5698
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK