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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787706 (21 seq.)
>W1710796584
LJSF01000027
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
16322
16249
-
Gly
TCC
[ENA]
¡û
>W131242030
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
746636
746563
-
Gly
TCC
[ENA]
¡û
>W1711695316
MSIT01000006
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
113800
113727
-
Gly
TCC
[ENA]
¡û
>W1711709211
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
1023924
1023851
-
Gly
TCC
[ENA]
¡û
>W1711709300
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
217620
217547
-
Gly
TCC
[ENA]
¡û
>C171105906
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
3105289
3105362
+
Gly
TCC
-
¡û
>WENV181233938
OFET01000370
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
11666
11739
+
Gly
TCC
[ENA]
¢þ
>WENV181234742
OFEU01003429
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
467
394
-
Gly
TCC
[ENA]
¢þ
>WENV019026
AACY020524387
Marine microbial communities from Global Ocean Sampling (GOS)
1976
2049
+
Gly
TCC
[ENA]
>WENV183716415
PDWJ01000002
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
334802
334875
+
Gly
TCC
[ENA]
¢þ
>W1910442681
FWFK01000004
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
525851
525778
-
Gly
TCC
[ENA]
¡û
>W1810464032
QAAA01000006
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
57753
57680
-
Gly
TCC
[ENA]
¡û
>W1810580449
QETF01000010
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
65705
65778
+
Gly
TCC
[ENA]
¡û
>C151006780
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
902278
902205
-
Gly
TCC
[Ensembl]
¡û
>C161001447
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
3334499
3334572
+
Gly
TCC
[Ensembl]
¡û
>C161087739
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3825005
3824932
-
Gly
TCC
-
¡û
>C161087788
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3789503
3789430
-
Gly
TCC
[Ensembl]
¡û
>W1610526255
JPPB01000335
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
235
308
+
Gly
TCC
[ENA]
¡û
>W1610660541
LJSF01000027
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
16322
16249
-
Gly
TCC
[ENA]
¡û
>W1710529322
FNNW01000008
Alphaproteobacteria
Celeribacter indicus [FNNW]
23433
23506
+
Gly
TCC
[ENA]
¡û
>W1710627556
JPPB01000335
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
235
308
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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