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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787707 (45 seq.)
>W1711175832
LWFA01000479
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
4171
4244
+
Gly
CCC
[ENA]
¡û
>W1711229652
LXYQ01000083
Alphaproteobacteria
Roseovarius indicus [LXYQ]
11823
11750
-
Gly
CCC
[ENA]
¡û
>W131223020
AUBS01000016
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
35798
35871
+
Gly
CCC
[ENA]
¡û
>W1711572435
MNBW01000004
Alphaproteobacteria
Nioella nitratireducens [MNBW]
118585
118512
-
Gly
CCC
[ENA]
¡û
>W1711695333
MSIT01000017
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
28605
28532
-
Gly
CCC
[ENA]
¡û
>W1712085140
NHTQ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium WFHF2C18 [NHTQ]
359996
360069
+
Gly
CCC
[ENA]
¡û
>C171032443
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
2887779
2887706
-
Gly
CCC
-
¡û
>w028022
ABCR01000013
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
37238
37313
+
Gly
CCC
[ENA]
¡û
>w020867
AAVE01000005
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 [AAVE]
297651
297724
+
Gly
CCC
[ENA]
¡û
>w012825
AAMU01000002
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [AAMU]
115853
115926
+
Gly
CCC
[ENA]
¡û
>WENV180376539
OBOM01023368
[OBOM] marine metagenome; Seawater
255
328
+
Gly
CCC
[ENA]
¢þ
>WENV180595581
OCPE01007910
[OCPE] marine metagenome; ENVO.00002150
15
88
+
Gly
CCC
[ENA]
¢þ
>WENV181162999
OEIO01060047
[OEIO] marine metagenome; sea ice
527
454
-
Gly
CCC
[ENA]
¢þ
>C08004178
CP000830
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 = DSM 16493 [CP000830]
1750240
1750313
+
Gly
CCC
[Ensembl]
¡û
>WENV170634512
FYBJ01001611
[FYBJ] marine metagenome; marine
2661
2734
+
Gly
CCC
[ENA]
¢þ
>C191020046
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
2233426
2233353
-
Gly
CCC
-
¡û
>W141820568
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
2076619
2076546
-
Gly
CCC
[ENA]
¡û
>W1910442843
FWFO01000001
Alphaproteobacteria
Falsiruegeria litorea R37 CECT 7639 [FWFO]
1976463
1976390
-
Gly
CCC
[ENA]
¡û
>W1910549366
FZPF01000007
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
11193
11120
-
Gly
CCC
[ENA]
¡û
>W1911237168
NSBT01000026
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
549459
549386
-
Gly
CCC
[ENA]
¡û
>W1911813284
QZEX01000002
Alphaproteobacteria
Chachezhania antarctica SM1703 [QZEX]
699553
699626
+
Gly
CCC
[ENA]
¡û
>W1810364804
PVTN01000014
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
92236
92163
-
Gly
CCC
[ENA]
¡û
>W1810400796
PYGJ01000020
Alphaproteobacteria
Shimia abyssi DSM 100673 [PYGJ]
841
768
-
Gly
CCC
[ENA]
¡û
>W1810580457
QETF01000014
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
17794
17867
+
Gly
CCC
[ENA]
¡û
>W1810594694
QGDJ01000002
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
246347
246420
+
Gly
CCC
[ENA]
¡û
>W1810761098
QPLJ01000006
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
165939
166012
+
Gly
CCC
[ENA]
¡û
>C151006148
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
2913636
2913709
+
Gly
CCC
[Ensembl]
¡û
>W1510000301
AQQZ01000001
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
281110
281037
-
Gly
CCC
[ENA]
¡û
>C10110127
CP002156
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [CP002156]
1548211
1548284
+
Gly
CCC
[Ensembl]
¡û
>W1511518778
JXYH01000007
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
16332
16405
+
Gly
CCC
[ENA]
¡û
>W1511524544
JYFE01000020
Alphaproteobacteria
Jannaschia aquimarina GSW-M26 [JYFE]
7932
7859
-
Gly
CCC
[ENA]
¡û
>W1610092475
CYPR01000043
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
8525
8452
-
Gly
CCC
[ENA]
¡û
>W1610526235
JPPB01000121
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
5076
5003
-
Gly
CCC
[ENA]
¡û
>W1610578301
LAXI01000012
Alphaproteobacteria
Roseovarius indicus [LAXI]
94124
94197
+
Gly
CCC
[ENA]
¡û
>W1610984145
LWFA01000479
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
4171
4244
+
Gly
CCC
[ENA]
¡û
>W1611013522
LXYQ01000083
Alphaproteobacteria
Roseovarius indicus [LXYQ]
11823
11750
-
Gly
CCC
[ENA]
¡û
>W1710095730
CYPR01000043
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
8525
8452
-
Gly
CCC
[ENA]
¡û
>W1710559859
FOMY01000005
Alphaproteobacteria
Roseovarius indicus [FOMY]
296217
296290
+
Gly
CCC
[ENA]
¡û
>W1710586272
FQXB01000001
Alphaproteobacteria
Cognatiyoonia sediminum [FQXB]
852345
852418
+
Gly
CCC
[ENA]
¡û
>W1710586326
FQXC01000002
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
88956
88883
-
Gly
CCC
[ENA]
¡û
>W1710591399
FRBR01000009
Alphaproteobacteria
Roseovarius pacificus [FRBR]
158100
158027
-
Gly
CCC
[ENA]
¡û
>W1710591906
FRCB01000006
Alphaproteobacteria
Roseovarius litoreus [FRCB]
129029
129102
+
Gly
CCC
[ENA]
¡û
>W1710616695
JFKC01000014
Alphaproteobacteria
Marivita geojedonensis [JFKC]
263
336
+
Gly
CCC
[ENA]
¡û
>W1710627536
JPPB01000121
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
5076
5003
-
Gly
CCC
[ENA]
¡û
>W1710697174
LAXI01000012
Alphaproteobacteria
Roseovarius indicus [LAXI]
94124
94197
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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