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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.788678 (27 seq.)
>W1711388867
MEIE01000014
Betaproteobacteria
Betaproteobacteria bacterium AqS2 [MEIE]
844
918
+
Gly
TCC
[ENA]
¡û
>WENV181172256
OEIV010565432
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17
90
+
Gly
TCC
[ENA]
¢þ
>WENV170411019
CEUJ01155575
[CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
91
164
+
Gly
TCC
[ENA]
¢þ
>WENV170413228
CEUK01090551
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
330
403
+
Gly
TCC
[ENA]
¢þ
>WENV170467204
CEVE01123197
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
251
178
-
Gly
TCC
[ENA]
¢þ
>WENV170577692
FSSH01000541
[FSSH] freshwater metagenome; drinking water
75427
75500
+
Gly
TCC
[ENA]
¢þ
>WENV170714361
LNFM01069655
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1711
1784
+
Gly
TCC
[ENA]
¢þ
>WENV170836526
MDSZ01133092
[MDSZ] marine metagenome; seawater
301
228
-
Gly
TCC
[ENA]
¢þ
>WENV170895979
MDTD01088217
[MDTD] marine metagenome; seawater
4035
4108
+
Gly
TCC
[ENA]
¢þ
>C181121175
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
616414
616487
+
Gly
TCC
-
¡û
>W141565165
JIBI01000028
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
15011
14938
-
Gly
TCC
[ENA]
¡û
>W1910226481
FMWO01000011
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
480
407
-
Gly
TCC
[ENA]
¡û
>W1910338821
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
682717
682790
+
Gly
TCC
[ENA]
¡û
>W1810463669
PZZT01000003
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
182201
182274
+
Gly
TCC
[ENA]
¡û
>W1810464177
QAAE01000004
Betaproteobacteria
Nitrosomonas aestuarii Nm36 [QAAE]
377
304
-
Gly
TCC
[ENA]
¡û
>W1810476844
QAOI01000005
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
180889
180962
+
Gly
TCC
[ENA]
¡û
>W1810696320
QLTE01000032
Betaproteobacteria
Nitrosomonas sp. Nm143 [QLTE]
48529
48602
+
Gly
TCC
[ENA]
¡û
>C11115659
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
890811
890884
+
Gly
TCC
[Ensembl]
¡û
>C131005658
CP003733
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii [ex Strigomonas [CP003733]
163656
163583
-
Gly
TCC
[Ensembl]
¡û
>C131007291
CP003805
Betaproteobacteria
Candidatus Kinetoplastibacterium oncopeltii TCC290E [CP003805]
802898
802825
-
Gly
TCC
[Ensembl]
¡û
>C131007333
CP003806
Betaproteobacteria
Candidatus Kinetoplastibacterium galatii TCC219 [CP003806]
814857
814784
-
Gly
TCC
[Ensembl]
¡û
>C131007375
CP003807
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii TCC012E [CP003807]
812763
812690
-
Gly
TCC
[Ensembl]
¡û
>W1710529701
FNOE01000002
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
212704
212777
+
Gly
TCC
[ENA]
¡û
>W1710548184
FODO01000003
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
180612
180685
+
Gly
TCC
[ENA]
¡û
>W1710567282
FOSP01000032
Betaproteobacteria
Nitrosomonas aestuarii [FOSP]
327
254
-
Gly
TCC
[ENA]
¡û
>W1710573505
FOXN01000028
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
14181
14108
-
Gly
TCC
[ENA]
¡û
>W1710594841
FSRM01000001
Betaproteobacteria
Paraburkholderia phenazinium [FSRM]
362982
362909
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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