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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.793351 (14 seq.)
>W1710996595
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1651975
1652048
+
Cys
GCA
[ENA]
¡û
>W1711585466
MNZS01000056
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
14867
14940
+
Cys
GCA
[ENA]
¡û
>C025352
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
1243457
1243530
+
Cys
GCA
[Ensembl]
¡û
>W141170924
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
391207
391280
+
Cys
GCA
[ENA]
¡û
>WENV170779625
LZQQ01000450
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
5477
5550
+
Cys
GCA
[ENA]
¢þ
>WENV170779769
LZQR01000401
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
6247
6320
+
Cys
GCA
[ENA]
¢þ
>C191011680
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
1645814
1645741
-
Cys
GCA
-
¡û
>C191084379
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
1258988
1259061
+
Cys
GCA
-
¡û
>C191098476
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1378204
1378131
-
Cys
GCA
-
¡û
>C191134033
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1368178
1368251
+
Cys
GCA
-
¡û
>W141776928
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
528809
528882
+
Cys
GCA
[ENA]
¡û
>W141820266
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1107533
1107606
+
Cys
GCA
[ENA]
¡û
>W1810185554
PKGB01000022
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
31260
31333
+
Cys
GCA
[ENA]
¡û
>W1610851252
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1651975
1652048
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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