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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80211 (13 seq.)
>W131160986
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
379897
379811
-
Leu
CAG
[ENA]
¡û
>W131161025
AQXE01000013
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
101904
101990
+
Leu
CAG
[ENA]
¡û
>WENV170419066
CEUM01093078
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
34552
34466
-
Leu
CAG
[ENA]
¢þ
>WENV170438781
CEUU01246815
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4
90
+
Leu
CAG
[ENA]
¢þ
>WENV170439471
CEUV01034334
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
114
200
+
Leu
CAG
[ENA]
¢þ
>WENV170468001
CEVF01003664
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
138
52
-
Leu
CAG
[ENA]
¢þ
>WENV170890270
MDTD01007429
[MDTD] marine metagenome; seawater
19809
19895
+
Leu
CAG
[ENA]
¢þ
>WENV170900612
MDTD01156811
[MDTD] marine metagenome; seawater
90
4
-
Leu
CAG
[ENA]
¢þ
>C181226979
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
1493943
1494029
+
Leu
CAG
-
¡û
>C181226991
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4015328
4015242
-
Leu
CAG
-
¡û
>C161068281
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2115907
2115821
-
Leu
CAG
[Ensembl]
¡û
>C161068282
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2110839
2110753
-
Leu
CAG
[Ensembl]
¡û
>C131017940
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3482105
3482019
-
Leu
CAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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