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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80626 (43 seq.)
>W1710893099
LNEK01000020
Alphaproteobacteria
Alphaproteobacteria bacterium Ga0077535 [LNEK]
245988
245903
-
Tyr
GTA
[ENA]
¡û
>W131109452
APHV01000138
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
379
294
-
Tyr
GTA
[ENA]
¡û
>W131109484
APHV01000388
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
10674
10589
-
Tyr
GTA
[ENA]
¡û
>WENV183093319
OLLY01000136
[OLLY] soil metagenome; soil
28738
28653
-
Tyr
GTA
[ENA]
¢þ
>WENV183727186
PJTO01010868
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
880
795
-
Tyr
GTA
[ENA]
¢þ
>WENV170555783
CXWL01002153
[CXWL] groundwater metagenome; biofilm material
182514
182599
+
Tyr
GTA
[ENA]
¢þ
>WENV170556116
CXWL01004985
[CXWL] groundwater metagenome; biofilm material
48643
48728
+
Tyr
GTA
[ENA]
¢þ
>WENV170558094
CXWL01049699
[CXWL] groundwater metagenome; biofilm material
1232
1317
+
Tyr
GTA
[ENA]
¢þ
>WENV170565906
FKKE01002039
[FKKE] freshwater metagenome; freshwater
2882
2797
-
Tyr
GTA
[ENA]
¢þ
>WENV170709858
LNFM01000816
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12140
12225
+
Tyr
GTA
[ENA]
¢þ
>WENV170713406
LNFM01030438
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6
91
+
Tyr
GTA
[ENA]
¢þ
>C181063137
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
751586
751671
+
Tyr
GTA
-
¡û
>W141520241
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1058404
1058489
+
Tyr
GTA
[ENA]
¡û
>W141520254
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
2265201
2265286
+
Tyr
GTA
[ENA]
¡û
>C191087919
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
2983106
2983021
-
Tyr
GTA
-
¡û
>C191087923
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
1181227
1181142
-
Tyr
GTA
-
¡û
>C191088033
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
2813926
2813841
-
Tyr
GTA
-
¡û
>C191088043
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
968815
968730
-
Tyr
GTA
-
¡û
>C191088083
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
2492841
2492756
-
Tyr
GTA
-
¡û
>W1910613027
LGQV01000010
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
82482
82567
+
Tyr
GTA
[ENA]
¡û
>W1911768769
QXHE01000028
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
42678
42593
-
Tyr
GTA
[ENA]
¡û
>W1911768779
QXHE01000038
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
46409
46324
-
Tyr
GTA
[ENA]
¡û
>W1810222234
POQV01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
648
563
-
Tyr
GTA
[ENA]
¡û
>W1810222290
POQV01000026
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
9452
9367
-
Tyr
GTA
[ENA]
¡û
>W1810223519
POTD01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
648
563
-
Tyr
GTA
[ENA]
¡û
>W1810223576
POTD01000027
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
12324
12239
-
Tyr
GTA
[ENA]
¡û
>W1810226129
POWG01000066
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
9533
9618
+
Tyr
GTA
[ENA]
¡û
>W1810226130
POWG01000073
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
16079
16164
+
Tyr
GTA
[ENA]
¡û
>W1810692554
QLKQ01000007
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
133026
132941
-
Tyr
GTA
[ENA]
¡û
>W1810692601
QLKQ01000076
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
15338
15253
-
Tyr
GTA
[ENA]
¡û
>C151034742
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
750366
750451
+
Tyr
GTA
[Ensembl]
¡û
>C151034755
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1951902
1951987
+
Tyr
GTA
[Ensembl]
¡û
>W1510016993
BBSY01000003
Alphaproteobacteria
alpha proteobacterium U9-1i [BBSY]
446132
446217
+
Tyr
GTA
[ENA]
¡û
>C121017716
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2420189
2420104
-
Tyr
GTA
[Ensembl]
¡û
>C121017731
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
1280397
1280312
-
Tyr
GTA
[Ensembl]
¡û
>C161047376
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
2253491
2253406
-
Tyr
GTA
[Ensembl]
¡û
>C161047391
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1107681
1107596
-
Tyr
GTA
[Ensembl]
¡û
>C161053901
CP013244
Alphaproteobacteria
Candidatus Viadribacter manganicus A272 [CP013244]
3667064
3667149
+
Tyr
GTA
[Ensembl]
¡û
>W1610753365
LNEK01000020
Alphaproteobacteria
Alphaproteobacteria bacterium Ga0077535 [LNEK]
245988
245903
-
Tyr
GTA
[ENA]
¡û
>W1710626725
JPIR01000111
Alphaproteobacteria
Azospirillum brasilense [JPIR]
371
286
-
Tyr
GTA
[ENA]
¡û
>W1710626727
JPIR01000117
Alphaproteobacteria
Azospirillum brasilense [JPIR]
9175
9090
-
Tyr
GTA
[ENA]
¡û
>W1710626765
JPIS01000037
Alphaproteobacteria
Azospirillum brasilense [JPIS]
371
286
-
Tyr
GTA
[ENA]
¡û
>W1710626780
JPIS01000078
Alphaproteobacteria
Azospirillum brasilense [JPIS]
9343
9428
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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