This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80637 (27 seq.)
>A171001116
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
557863
557948
+
Leu
TAA
-
¡û
>A171002471
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1182205
1182120
-
Leu
TAA
-
¡û
>A171003151
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
167477
167562
+
Leu
TAA
-
¡û
>A171004128
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
331856
331939
+
Leu
TAA
-
¡û
>A171006979
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2327334
2327251
-
Leu
TAA
-
¡û
>WENV170702889
LKMJ01004533
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4381
4297
-
Leu
TAA
[ENA]
¢þ
>W1910229327
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1288265
1288182
-
Leu
TAA
[ENA]
¡û
>W1910229811
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
615206
615122
-
Leu
TAA
[ENA]
¡û
>W1910229955
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
278376
278461
+
Leu
TAA
[ENA]
¡û
>W1910230851
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
256317
256400
+
Leu
TAA
[ENA]
¡û
>W1910340501
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
738557
738474
-
Leu
TAA
[ENA]
¡û
>W1910572551
JMIP02000013
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
8265
8182
-
Leu
TAA
[ENA]
¡û
>W1910572734
JNCS01000017
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
1595
1680
+
Leu
TAA
[ENA]
¡û
>W1910575890
JROF01000025
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
20381
20466
+
Leu
TAA
[ENA]
¡û
>W1910583004
JXAN01000012
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
32761
32845
+
Leu
TAA
[ENA]
¡û
>W1910826114
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
726922
726837
-
Leu
TAA
[ENA]
¡û
>W1911572211
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1218463
1218548
+
Leu
TAA
[ENA]
¡û
>W1610005352
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
71286
71371
+
Pseudo
TAA
[ENA]
¡û
>W1610012027
AOHZ01000034
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
39721
39636
-
Leu
TAA
[ENA]
¡û
>W1610012221
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
79789
79704
-
Leu
TAA
[ENA]
¡û
>W1610012284
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
33812
33896
+
Leu
TAA
[ENA]
¡û
>W1610012347
AOIJ01000055
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
66891
66806
-
Leu
TAA
[ENA]
¡û
>W1610012398
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
317262
317177
-
Leu
TAA
[ENA]
¡û
>W1610012741
AOIS01000058
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
43907
43992
+
Leu
TAA
[ENA]
¡û
>W1610046859
BBCV01000030
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
7510
7425
-
Leu
TAA
[ENA]
¡û
>W1610082983
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
148284
148200
-
Leu
TAA
[ENA]
¡û
>W1610671375
LKCV01000085
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
12996
12911
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK