This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80746 (10 seq.)
>WENV181228521
OFEH01000106
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
2019
2102
+
Leu
GAG
[ENA]
¢þ
>WENV181407342
OGCG01018543
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
188
271
+
Leu
GAG
[ENA]
¢þ
>WENV181407588
OGCG01044921
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
587
504
-
Leu
GAG
[ENA]
¢þ
>C08005581
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
670771
670854
+
Leu
GAG
[Ensembl]
¡û
>C151003650
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
659373
659456
+
Leu
GAG
[Ensembl]
¡û
>C151003694
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
659428
659511
+
Leu
GAG
[Ensembl]
¡û
>W10115203
ADJO01000006
Aquificota
Hydrogenobaculum sp. SN [ADJO]
84832
84915
+
Leu
GAG
[ENA]
¡û
>W11118789
ADJO01000006
Aquificota
Hydrogenobaculum sp. SN [ADJO]
84832
84915
+
Leu
GAG
[ENA]
¡û
>C131013390
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
659401
659484
+
Leu
GAG
[Ensembl]
¡û
>C131013701
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
659368
659451
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK