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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80747 (27 seq.)
>C009990
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
682062
682147
+
Tyr
GTA
[Ensembl]
¡û
>C010113
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
3147467
3147382
-
Tyr
GTA
[Ensembl]
¡û
>WENV180297309
OBJA01020855
[OBJA] soil metagenome; sediment, water from around vicinity
124
39
-
Tyr
GTA
[ENA]
¢þ
>WENV180317076
OBKJ01017221
[OBKJ] metagenome; hydrothermal vent
1
86
+
Tyr
GTA
[ENA]
¢þ
>WENV181206307
OFAT01003711
[OFAT] metagenome; hydrothermal vent
345
260
-
Tyr
GTA
[ENA]
¢þ
>WENV181207175
OFAY01002700
[OFAY] metagenome; hydrothermal vent
1291
1376
+
Tyr
GTA
[ENA]
¢þ
>WENV181207540
OFAZ01002413
[OFAZ] metagenome; hydrothermal vent
1721
1806
+
Tyr
GTA
[ENA]
¢þ
>WENV181208030
OFBA01010812
[OFBA] metagenome; hydrothermal vent
302
387
+
Tyr
GTA
[ENA]
¢þ
>WENV181208304
OFBB01003101
[OFBB] metagenome; hydrothermal vent
1388
1473
+
Tyr
GTA
[ENA]
¢þ
>WENV181223945
OFDD01004259
[OFDD] metagenome; hydrothermal vent
1030
1115
+
Tyr
GTA
[ENA]
¢þ
>WENV181224802
OFDG01005556
[OFDG] metagenome; hydrothermal vent
522
607
+
Tyr
GTA
[ENA]
¢þ
>WENV181229741
OFEK01000041
[OFEK] activated sludge metagenome; Anaerobic digester
47556
47641
+
Tyr
GTA
[ENA]
¢þ
>WENV170000053
AERA01003607
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
390
475
+
Tyr
GTA
[ENA]
¢þ
>WENV170622532
FUWD013108145
[FUWD] metagenome; unknown
162
247
+
Tyr
GTA
[ENA]
¢þ
>WENV170630753
FUWD013322339
[FUWD] metagenome; unknown
162
247
+
Tyr
GTA
[ENA]
¢þ
>WENV170657629
JTFP01005602
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
829
914
+
Tyr
GTA
[ENA]
¢þ
>WENV170657693
JTFP01010874
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1181
1096
-
Tyr
GTA
[ENA]
¢þ
>WENV170661381
JXWV01017755
[JXWV] soil metagenome; rice field; organic FYM Plot
296
211
-
Tyr
GTA
[ENA]
¢þ
>WENV170689889
LFRM01316319
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
292
377
+
Tyr
GTA
[ENA]
¢þ
>WENV170720509
LSQX01156003
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
194
279
+
Tyr
GTA
[ENA]
¢þ
>C191000622
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
3070223
3070138
-
Tyr
GTA
-
¡û
>SRA1025919
SRR035085.110687
454 Sequencing (SRP001806)
195
280
+
Tyr
GTA
[SRA]
>SRA1033166
SRR035088.188528
454 Sequencing (SRP001809)
154
239
+
Tyr
GTA
[SRA]
>C10107455
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
3041798
3041713
-
Tyr
GTA
[Ensembl]
¡û
>WENV11100411
AERA01003607
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
390
475
+
Tyr
GTA
[ENA]
¡û
>W1511501008
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
2605820
2605735
-
Tyr
GTA
[ENA]
¡û
>C161080253
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2949780
2949695
-
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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