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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80756 (98 seq.)
>W1710858998
LMBR01000100
Chlorobiota
Chlorobium limicola [LMBR]
4150
4067
-
Tyr
GTA
[ENA]
¡û
>W1711136057
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
506555
506472
-
Tyr
GTA
[ENA]
¡û
>C171049442
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
263468
263551
+
Tyr
GTA
-
¡û
>C171113990
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
266240
266323
+
Tyr
GTA
-
¡û
>C007005
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
152097
152179
+
Tyr
GTA
[Ensembl]
¡û
>w006127
AAHJ01000052
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
79
164
+
Tyr
GTA
[ENA]
¡û
>WENV181237146
OFFA01181379
[OFFA] coral metagenome; NA
331
414
+
Tyr
GTA
[ENA]
¢þ
>C08003489
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
210606
210689
+
Tyr
GTA
[Ensembl]
¡û
>WENV183513543
OMKS01005830
[OMKS] sediment metagenome; hot spring sediment
2423
2340
-
Tyr
GTA
[ENA]
¢þ
>WENV170552413
CXWJ01063669
[CXWJ] wastewater metagenome; activated sludge
1022
1107
+
Tyr
GTA
[ENA]
¢þ
>WENV170613993
FUWD012823312
[FUWD] metagenome; unknown
14589
14674
+
Tyr
GTA
[ENA]
¢þ
>WENV170624597
FUWD013183728
[FUWD] metagenome; unknown
8137
8220
+
Tyr
GTA
[ENA]
¢þ
>WENV170632880
FUWD013388245
[FUWD] metagenome; unknown
8137
8220
+
Tyr
GTA
[ENA]
¢þ
>WENV170992509
MWWB01037162
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
96
179
+
Tyr
GTA
[ENA]
¢þ
>WENV170992656
MWWB01062379
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
116
31
-
Tyr
GTA
[ENA]
¢þ
>WENV170993232
MWWB01227627
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
128
213
+
Tyr
GTA
[ENA]
¢þ
>C181068766
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
290657
290740
+
Tyr
GTA
-
¡û
>W1810062241
PDNY01000026
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
16348
16265
-
Tyr
GTA
[ENA]
¡û
>W1810062261
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
227291
227208
-
Tyr
GTA
[ENA]
¡û
>SRA1017489
SRR035082.148445
454 Sequencing (SRP001803)
141
56
-
Tyr
GTA
[SRA]
>SRA1019126
SRR035082.406202
454 Sequencing (SRP001803)
95
10
-
Tyr
GTA
[SRA]
>SRA1019876
SRR035083.10803
454 Sequencing (SRP001804)
247
162
-
Tyr
GTA
[SRA]
>SRA1019903
SRR035083.18618
454 Sequencing (SRP001804)
224
139
-
Tyr
GTA
[SRA]
>SRA1020090
SRR035083.56609
454 Sequencing (SRP001804)
114
199
+
Tyr
GTA
[SRA]
>SRA1020107
SRR035083.58046
454 Sequencing (SRP001804)
169
84
-
Tyr
GTA
[SRA]
>SRA1020358
SRR035083.101598
454 Sequencing (SRP001804)
249
164
-
Tyr
GTA
[SRA]
>SRA1020409
SRR035083.110863
454 Sequencing (SRP001804)
247
162
-
Tyr
GTA
[SRA]
>SRA1020768
SRR035083.162002
454 Sequencing (SRP001804)
167
82
-
Tyr
GTA
[SRA]
>SRA1020769
SRR035083.162038
454 Sequencing (SRP001804)
31
116
+
Tyr
GTA
[SRA]
>SRA1020916
SRR035083.184374
454 Sequencing (SRP001804)
460
543
+
Tyr
GTA
[SRA]
>SRA1021041
SRR035083.202516
454 Sequencing (SRP001804)
188
103
-
Tyr
GTA
[SRA]
>SRA1021530
SRR035083.269832
454 Sequencing (SRP001804)
244
329
+
Tyr
GTA
[SRA]
>SRA1021576
SRR035083.275398
454 Sequencing (SRP001804)
14
99
+
Tyr
GTA
[SRA]
>SRA1021731
SRR035083.298522
454 Sequencing (SRP001804)
334
419
+
Tyr
GTA
[SRA]
>SRA1022124
SRR035083.356142
454 Sequencing (SRP001804)
104
19
-
Tyr
GTA
[SRA]
>SRA1022315
SRR035083.387277
454 Sequencing (SRP001804)
120
35
-
Tyr
GTA
[SRA]
>SRA1022445
SRR035083.406043
454 Sequencing (SRP001804)
224
309
+
Tyr
GTA
[SRA]
>SRA1022483
SRR035083.412217
454 Sequencing (SRP001804)
45
130
+
Tyr
GTA
[SRA]
>SRA1022786
SRR035083.459930
454 Sequencing (SRP001804)
409
324
-
Tyr
GTA
[SRA]
>SRA1026320
SRR035085.185260
454 Sequencing (SRP001806)
345
260
-
Tyr
GTA
[SRA]
>SRA1028806
SRR035087.12237
454 Sequencing (SRP001808)
142
227
+
Tyr
GTA
[SRA]
>SRA1029074
SRR035087.69287
454 Sequencing (SRP001808)
131
216
+
Tyr
GTA
[SRA]
>SRA1029251
SRR035087.98062
454 Sequencing (SRP001808)
81
166
+
Tyr
GTA
[SRA]
>SRA1032625
SRR035088.66700
454 Sequencing (SRP001809)
55
140
+
Tyr
GTA
[SRA]
>SRA1032720
SRR035088.86779
454 Sequencing (SRP001809)
207
122
-
Tyr
GTA
[SRA]
>SRA1032862
SRR035088.118389
454 Sequencing (SRP001809)
1
86
+
Tyr
GTA
[SRA]
>SRA1032881
SRR035088.121271
454 Sequencing (SRP001809)
79
164
+
Tyr
GTA
[SRA]
>SRA1032993
SRR035088.146051
454 Sequencing (SRP001809)
259
341
+
Tyr
GTA
[SRA]
>SRA1033009
SRR035088.151199
454 Sequencing (SRP001809)
262
177
-
Tyr
GTA
[SRA]
>SRA1033433
SRR035088.256733
454 Sequencing (SRP001809)
142
227
+
Tyr
GTA
[SRA]
>SRA1034203
SRR035089.22523
454 Sequencing (SRP001810)
13
98
+
Tyr
GTA
[SRA]
>SRA1035266
SRR035089.270799
454 Sequencing (SRP001810)
91
6
-
Tyr
GTA
[SRA]
>SRA1036339
SRR035089.498190
454 Sequencing (SRP001810)
189
274
+
Tyr
GTA
[SRA]
>SRA1036876
SRR035090.30685
454 Sequencing (SRP001811)
13
98
+
Tyr
GTA
[SRA]
>SRA1036929
SRR035090.40403
454 Sequencing (SRP001811)
271
356
+
Tyr
GTA
[SRA]
>SRA1036951
SRR035090.44248
454 Sequencing (SRP001811)
99
14
-
Tyr
GTA
[SRA]
>SRA1036974
SRR035090.49611
454 Sequencing (SRP001811)
98
13
-
Tyr
GTA
[SRA]
>SRA1037011
SRR035090.58581
454 Sequencing (SRP001811)
230
315
+
Tyr
GTA
[SRA]
>SRA1037066
SRR035090.69197
454 Sequencing (SRP001811)
13
98
+
Tyr
GTA
[SRA]
>SRA1037332
SRR035090.117969
454 Sequencing (SRP001811)
36
121
+
Tyr
GTA
[SRA]
>SRA1037555
SRR035090.153420
454 Sequencing (SRP001811)
205
290
+
Tyr
GTA
[SRA]
>SRA1037573
SRR035090.157200
454 Sequencing (SRP001811)
173
88
-
Tyr
GTA
[SRA]
>SRA1037767
SRR035090.191656
454 Sequencing (SRP001811)
374
459
+
Tyr
GTA
[SRA]
>SRA1037962
SRR035090.226922
454 Sequencing (SRP001811)
173
88
-
Tyr
GTA
[SRA]
>SRA1038088
SRR035090.243541
454 Sequencing (SRP001811)
232
317
+
Tyr
GTA
[SRA]
>SRA1038149
SRR035090.254382
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1038443
SRR035090.305700
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1038850
SRR035090.379507
454 Sequencing (SRP001811)
152
67
-
Tyr
GTA
[SRA]
>SRA1038968
SRR035090.401944
454 Sequencing (SRP001811)
147
62
-
Tyr
GTA
[SRA]
>SRA1039072
SRR035090.419604
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1039132
SRR035090.429851
454 Sequencing (SRP001811)
313
395
+
Tyr
GTA
[SRA]
>SRA1039227
SRR035090.446979
454 Sequencing (SRP001811)
133
48
-
Tyr
GTA
[SRA]
>SRA1039500
SRR035090.504205
454 Sequencing (SRP001811)
377
462
+
Tyr
GTA
[SRA]
>SRA1039533
SRR035090.509368
454 Sequencing (SRP001811)
210
125
-
Tyr
GTA
[SRA]
>SRA1039719
SRR035090.553612
454 Sequencing (SRP001811)
287
372
+
Tyr
GTA
[SRA]
>SRA1039889
SRR035090.593658
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1045891
SRR035093.190883
454 Sequencing (SRP001814)
141
56
-
Tyr
GTA
[SRA]
>SRA1046201
SRR035093.253138
454 Sequencing (SRP001814)
136
221
+
Tyr
GTA
[SRA]
>SRA1046637
SRR035093.349835
454 Sequencing (SRP001814)
135
50
-
Tyr
GTA
[SRA]
>SRA1053338
SRR035098.386680
454 Sequencing (SRP001819)
143
58
-
Tyr
GTA
[SRA]
>SRA1054033
SRR035099.38386
454 Sequencing (SRP001820)
424
339
-
Tyr
GTA
[SRA]
>SRA1054079
SRR035099.52193
454 Sequencing (SRP001820)
175
90
-
Tyr
GTA
[SRA]
>SRA1054175
SRR035099.76427
454 Sequencing (SRP001820)
374
289
-
Tyr
GTA
[SRA]
>SRA1054256
SRR035099.93112
454 Sequencing (SRP001820)
156
71
-
Tyr
GTA
[SRA]
>SRA1054358
SRR035099.115116
454 Sequencing (SRP001820)
156
241
+
Tyr
GTA
[SRA]
>SRA1054375
SRR035099.118584
454 Sequencing (SRP001820)
271
186
-
Tyr
GTA
[SRA]
>SRA1054563
SRR035099.164290
454 Sequencing (SRP001820)
215
300
+
Tyr
GTA
[SRA]
>SRA1054591
SRR035099.169747
454 Sequencing (SRP001820)
364
279
-
Tyr
GTA
[SRA]
>SRA1054609
SRR035099.172210
454 Sequencing (SRP001820)
231
146
-
Tyr
GTA
[SRA]
>SRA1054649
SRR035099.181707
454 Sequencing (SRP001820)
186
271
+
Tyr
GTA
[SRA]
>SRA1054658
SRR035099.182850
454 Sequencing (SRP001820)
424
339
-
Tyr
GTA
[SRA]
>SRA1054684
SRR035099.188520
454 Sequencing (SRP001820)
156
241
+
Tyr
GTA
[SRA]
>SRA1054699
SRR035099.190338
454 Sequencing (SRP001820)
237
152
-
Tyr
GTA
[SRA]
>SRA1054746
SRR035099.205446
454 Sequencing (SRP001820)
534
449
-
Tyr
GTA
[SRA]
>SRA1054759
SRR035099.207667
454 Sequencing (SRP001820)
286
371
+
Tyr
GTA
[SRA]
>SRA1054844
SRR035099.228704
454 Sequencing (SRP001820)
296
211
-
Tyr
GTA
[SRA]
>W1610721344
LMBR01000100
Chlorobiota
Chlorobium limicola [LMBR]
4150
4067
-
Tyr
GTA
[ENA]
¡û
>W1610947177
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
506555
506472
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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