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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80821 (5 seq.)
>WENV180520580
OCHE01164547
[OCHE] human gut metagenome; human gut
53
138
+
Leu
TAA
[ENA]
¢þ
>WENV181877596
OGXD01021354
[OGXD] human gut metagenome; faeces
1125
1038
-
Leu
TAA
[ENA]
¢þ
>WENV181901273
OGXW01001045
[OGXW] human gut metagenome; faeces
21055
20968
-
Leu
TAA
[ENA]
¢þ
>WENV182193293
OHPB01002055
[OHPB] human gut metagenome; feces
9355
9268
-
Leu
TAA
[ENA]
¢þ
>WENV183053404
OLGL01012230
[OLGL] human gut metagenome; faeces
80
167
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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