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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80841 (43 seq.)
>W1710888776
LMZZ01000015
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
73330
73415
+
Leu
CAA
[ENA]
¡û
>W1711188593
LWQP01000010
Gammaproteobacteria
Haemophilus sp. HMSC066D02 [LWQP]
35624
35539
-
Leu
CAA
[ENA]
¡û
>W1711766149
MUYD01000003
Gammaproteobacteria
[Haemophilus] ducreyi [MUYD]
65652
65737
+
Leu
CAA
[ENA]
¡û
>C010476
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
1358568
1358653
+
Leu
CAA
[Ensembl]
¡û
>WENV180121168
OASQ01001999
[OASQ] human gut metagenome; faeces
1414
1329
-
Leu
CAA
[ENA]
¢þ
>WENV180722633
ODGM01005427
[ODGM] human metagenome; G_DNA_Palatine Tonsils
1772
1687
-
Leu
CAA
[ENA]
¢þ
>WENV182956197
OKWE01002117
[OKWE] human gut metagenome; human gut
4199
4114
-
Leu
CAA
[ENA]
¢þ
>C181055860
CP022037
Gammaproteobacteria
[Haemophilus] ducreyi FDAARGOS_297 [CP022037]
1030869
1030784
-
Leu
CAA
-
¡û
>C181225302
LT906456
Gammaproteobacteria
Actinobacillus suis NCTC12996 [LT906456]
1037956
1038041
+
Leu
CAA
-
¡û
>C191162721
CP038871
Gammaproteobacteria
Pasteurella multocida FCf15 [CP038871]
1998244
1998329
+
Leu
CAA
-
¡û
>C191209004
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
1008908
1008823
-
Leu
CAA
-
¡û
>W1810578278
QEPO01000002
Gammaproteobacteria
Haemophilus parainfluenzae C2004000280 [QEPO]
396822
396737
-
Leu
CAA
[ENA]
¡û
>C151032765
CP007715
Gammaproteobacteria
Actinobacillus equuli subsp. equuli 19392 [CP007715]
1010426
1010511
+
Leu
CAA
[Ensembl]
¡û
>C151044969
CP009159
Gammaproteobacteria
Actinobacillus suis ATCC 33415 [CP009159]
1037809
1037894
+
Leu
CAA
[Ensembl]
¡û
>W10120717
ADXO01000031
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADXO]
160343
160258
-
Leu
CAA
[ENA]
¡û
>W11127461
ADXO01000031
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADXO]
160343
160258
-
Leu
CAA
[ENA]
¡û
>C161032162
CP011218
Gammaproteobacteria
[Haemophilus] ducreyi NZS1 [CP011218]
1278498
1278583
+
Leu
CAA
-
¡û
>C161032214
CP011219
Gammaproteobacteria
[Haemophilus] ducreyi NZS2 [CP011219]
1304355
1304440
+
Leu
CAA
-
¡û
>C161032266
CP011220
Gammaproteobacteria
[Haemophilus] ducreyi NZS3 [CP011220]
1297998
1298083
+
Leu
CAA
-
¡û
>C161032318
CP011221
Gammaproteobacteria
[Haemophilus] ducreyi NZS4 [CP011221]
1285871
1285956
+
Leu
CAA
-
¡û
>C161032371
CP011222
Gammaproteobacteria
[Haemophilus] ducreyi 82-029362 [CP011222]
1318097
1318182
+
Leu
CAA
-
¡û
>C161032421
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
1336005
1336090
+
Leu
CAA
-
¡û
>C161032469
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
1315039
1315124
+
Leu
CAA
-
¡û
>C161032517
CP011225
Gammaproteobacteria
[Haemophilus] ducreyi HMC46 [CP011225]
1294748
1294833
+
Leu
CAA
-
¡û
>C161032568
CP011226
Gammaproteobacteria
[Haemophilus] ducreyi HMC56 [CP011226]
1264908
1264993
+
Leu
CAA
-
¡û
>C161032666
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
1229422
1229507
+
Leu
CAA
-
¡û
>C161032717
CP011229
Gammaproteobacteria
[Haemophilus] ducreyi CIP 54.2 [CP011229]
1214521
1214606
+
Leu
CAA
-
¡û
>C161032770
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
1238769
1238854
+
Leu
CAA
-
¡û
>C161032821
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
1213697
1213782
+
Leu
CAA
-
¡û
>C161087851
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
356304
356219
-
Leu
CAA
-
¡û
>C161087877
CP015425
Gammaproteobacteria
[Haemophilus] ducreyi VAN2 [CP015425]
1372089
1372004
-
Leu
CAA
-
¡û
>C161087938
CP015426
Gammaproteobacteria
[Haemophilus] ducreyi VAN3 [CP015426]
860513
860428
-
Leu
CAA
-
¡û
>C161087965
CP015427
Gammaproteobacteria
[Haemophilus] ducreyi VAN4 [CP015427]
1038610
1038695
+
Leu
CAA
-
¡û
>C161088002
CP015428
Gammaproteobacteria
[Haemophilus] ducreyi VAN5 [CP015428]
334593
334678
+
Leu
CAA
-
¡û
>C161088096
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
348890
348805
-
Leu
CAA
-
¡û
>C161088100
CP015430
Gammaproteobacteria
[Haemophilus] ducreyi GHA2 [CP015430]
387215
387300
+
Leu
CAA
-
¡û
>C161088185
CP015431
Gammaproteobacteria
[Haemophilus] ducreyi GHA3 [CP015431]
693430
693345
-
Leu
CAA
-
¡û
>C161088208
CP015432
Gammaproteobacteria
[Haemophilus] ducreyi GHA5 [CP015432]
1141646
1141731
+
Leu
CAA
-
¡û
>C161088279
CP015433
Gammaproteobacteria
[Haemophilus] ducreyi GHA8 [CP015433]
875832
875747
-
Leu
CAA
-
¡û
>C161088314
CP015434
Gammaproteobacteria
[Haemophilus] ducreyi GHA9 [CP015434]
1069707
1069792
+
Leu
CAA
-
¡û
>W121066961
AJSX01000027
Gammaproteobacteria
Pasteurella bettyae CCUG 2042 [AJSX]
46486
46401
-
Leu
CAA
[ENA]
¡û
>W1610749154
LMZZ01000015
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
73330
73415
+
Leu
CAA
[ENA]
¡û
>W1710555109
FOJC01000002
Gammaproteobacteria
[Haemophilus] ducreyi [FOJC]
168330
168245
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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