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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80946 (22 seq.)
>A171001127
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2134240
2134325
+
Leu
CAA
-
¡û
>A171002727
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1484077
1483992
-
Leu
CAA
-
¡û
>A171003123
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
221431
221346
-
Leu
CAA
-
¡û
>A171003483
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3689822
3689905
+
Leu
CAA
-
¡û
>A171006932
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3266279
3266194
-
Leu
CAA
-
¡û
>WENV170679658
LFCJ01000104
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
41004
41089
+
Leu
CAA
[ENA]
¢þ
>W1910230240
FOKW01000003
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
295842
295927
+
Leu
CAA
[ENA]
¡û
>W1910230454
FORO01000024
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
42175
42090
-
Leu
CAA
[ENA]
¡û
>W1911591342
PKKI01000035
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
13873
13958
+
Leu
CAA
[ENA]
¡û
>W1610004071
AGFZ01000116
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
1212
1127
-
Leu
CAA
[ENA]
¡û
>W1610004097
AGIM01000007
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
177897
177982
+
Leu
CAA
[ENA]
¡û
>W1610012062
AOIA01000017
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
60166
60083
-
Leu
CAA
[ENA]
¡û
>W1610012146
AOIB01000039
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
281
364
+
Leu
CAA
[ENA]
¡û
>W1610012178
AOIC01000087
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
41977
41892
-
Leu
CAA
[ENA]
¡û
>W1610012414
AOIL01000012
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
51852
51769
-
Leu
CAA
[ENA]
¡û
>W1610012547
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
386103
386186
+
Leu
CAA
[ENA]
¡û
>W1610012616
AOIP01000032
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
191210
191293
+
Leu
CAA
[ENA]
¡û
>W1610012626
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
73780
73865
+
Leu
CAA
[ENA]
¡û
>W1610012739
AOIS01000045
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
157481
157396
-
Leu
CAA
[ENA]
¡û
>W1610012789
AOIT01000039
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
49162
49077
-
Leu
CAA
[ENA]
¡û
>W1610014435
AOLZ01000056
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
1301
1216
-
Leu
CAA
[ENA]
¡û
>W1610014451
AOMA01000017
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
27284
27369
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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