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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80959 (13 seq.)
>A171002272
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
622114
622031
-
Leu
CAG
-
¡û
>A171003985
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1217353
1217436
+
Leu
CAG
-
¡û
>A171007309
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
987615
987698
+
Leu
CAG
-
¡û
>A171007361
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1888175
1888258
+
Leu
CAG
-
¡û
>A171007417
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
1155955
1155872
-
Leu
CAG
-
¡û
>A171007684
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
580816
580733
-
Leu
CAG
-
¡û
>WENV170651535
JRYF01057006
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
217
134
-
Leu
CAG
[ENA]
¢þ
>WENV170671185
LAHU01023360
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
576
659
+
Leu
CAG
[ENA]
¢þ
>WENV170677328
LDZT01004977
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5119
5036
-
Leu
CAG
[ENA]
¢þ
>W1610006217
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
1038
955
-
Leu
CAG
[ENA]
¡û
>W1610011025
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
37266
37183
-
Leu
CAG
[ENA]
¡û
>W1610049146
BBES01000004
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
104100
104017
-
Leu
CAG
[ENA]
¡û
>W1610613882
LGGL01000084
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
5119
5036
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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