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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80973 (19 seq.)
>A171000009
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
852160
852244
+
Ser
GCT
-
¡û
>A171004175
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
1906743
1906827
+
Ser
GCT
-
¡û
>A171004415
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1414824
1414741
-
Ser
GCT
-
¡û
>A171006173
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1415166
1415083
-
Ser
GCT
-
¡û
>A171006713
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
724434
724351
-
Ser
GCT
-
¡û
>A171006754
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
752182
752099
-
Ser
GCT
-
¡û
>A171007441
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1611008
1611092
+
Ser
GCT
-
¡û
>WENV180318229
OBKM01000136
[OBKM] metagenome; water
1584
1667
+
Ser
GCT
[ENA]
¢þ
>At0803
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
860171
860253
+
Ser
GCT
[Ensembl]
¡û
>W1910230020
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
2779922
2779838
-
Ser
GCT
[ENA]
¡û
>W1610004180
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1451737
1451652
-
Ser
GCT
[ENA]
¡û
>W1610061861
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1639160
1639245
+
Ser
GCT
[ENA]
¡û
>W1610085059
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
369793
369878
+
Ser
GCT
[ENA]
¡û
>W1610085124
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1089767
1089682
-
Ser
GCT
[ENA]
¡û
>W1610085163
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1132751
1132666
-
Ser
GCT
[ENA]
¡û
>W1610085202
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
1131603
1131518
-
Ser
GCT
[ENA]
¡û
>W1610085225
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1427220
1427305
+
Ser
GCT
[ENA]
¡û
>W1610085258
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
369952
370037
+
Ser
GCT
[ENA]
¡û
>W1610085307
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1383754
1383839
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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