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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81007 (69 seq.)
>W1710931991
LOHU01000058
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
1451
1366
-
Leu
TAA
[ENA]
¡û
>W1711124583
LUKH01000006
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
12375
12290
-
Leu
TAA
[ENA]
¡û
>W1711258956
LYUZ01000046
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
11243
11158
-
Leu
TAA
[ENA]
¡û
>C171092045
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
3714339
3714424
+
Leu
TAA
-
¡û
>W08005878
ABIF01000011
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
99876
99961
+
Leu
TAA
[ENA]
¡û
>W141151436
AXBB01000001
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
1312406
1312321
-
Leu
TAA
[ENA]
¡û
>W141151542
AXBD01000002
Alphaproteobacteria
Leisingera daeponensis DSM 23529 [AXBD]
1440890
1440805
-
Leu
TAA
[ENA]
¡û
>W141151610
AXBE01000004
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
798063
797978
-
Leu
TAA
[ENA]
¡û
>W141151778
AXBI01000009
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
227986
227901
-
Leu
TAA
[ENA]
¡û
>WENV170962033
MRWF01003245
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
62594
62679
+
Leu
TAA
[ENA]
¢þ
>WENV170963289
MRWG01000077
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
183793
183878
+
Leu
TAA
[ENA]
¢þ
>C181008455
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
2305631
2305546
-
Leu
TAA
-
¡û
>C181008475
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
1231164
1231249
+
Leu
TAA
-
¡û
>C181008570
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
2181236
2181151
-
Leu
TAA
-
¡û
>C181008589
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
1241046
1241131
+
Leu
TAA
-
¡û
>C181008646
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
1242438
1242523
+
Leu
TAA
-
¡û
>C181008703
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
1192996
1193081
+
Leu
TAA
-
¡û
>C181008799
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
2140659
2140574
-
Leu
TAA
-
¡û
>C181008824
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
1600117
1600202
+
Leu
TAA
-
¡û
>C181008876
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
1171247
1171332
+
Leu
TAA
-
¡û
>C181008933
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
1214409
1214494
+
Leu
TAA
-
¡û
>C181009029
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
1969514
1969429
-
Leu
TAA
-
¡û
>C181009047
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
1242722
1242807
+
Leu
TAA
-
¡û
>C181009104
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
1232323
1232408
+
Leu
TAA
-
¡û
>C181009200
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
2339883
2339798
-
Leu
TAA
-
¡û
>C181009219
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
1175588
1175673
+
Leu
TAA
-
¡û
>C181009276
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
1171247
1171332
+
Leu
TAA
-
¡û
>C181009333
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
1240109
1240194
+
Leu
TAA
-
¡û
>C181009430
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
2199587
2199502
-
Leu
TAA
-
¡û
>C181009449
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
1159896
1159981
+
Leu
TAA
-
¡û
>C181009506
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
1288452
1288537
+
Leu
TAA
-
¡û
>C181009563
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
1220034
1220119
+
Leu
TAA
-
¡û
>C181009619
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
1283371
1283456
+
Leu
TAA
-
¡û
>C181009676
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
1240274
1240359
+
Leu
TAA
-
¡û
>C181009733
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
1241045
1241130
+
Leu
TAA
-
¡û
>C181009829
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
2181236
2181151
-
Leu
TAA
-
¡û
>C181009848
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
1175051
1175136
+
Leu
TAA
-
¡û
>C181009944
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
2304465
2304380
-
Leu
TAA
-
¡û
>C181009963
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
1171247
1171332
+
Leu
TAA
-
¡û
>C181049003
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
2211574
2211489
-
Leu
TAA
-
¡û
>C181049060
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
2211574
2211489
-
Leu
TAA
-
¡û
>C191083133
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
1220882
1220967
+
Leu
TAA
-
¡û
>C191083189
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
1279443
1279528
+
Leu
TAA
-
¡û
>C191083237
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
343238
343323
+
Leu
TAA
-
¡û
>C191141148
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
2414127
2414042
-
Leu
TAA
-
¡û
>C191158491
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
2397866
2397781
-
Leu
TAA
-
¡û
>W09111713
ABXF01000032
Alphaproteobacteria
Rhodobacterales bacterium Y4I [ABXF]
52409
52324
-
Leu
TAA
[ENA]
¡û
>C141008345
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
1294998
1295083
+
Leu
TAA
[Ensembl]
¡û
>C141011207
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
2305497
2305412
-
Leu
TAA
[Ensembl]
¡û
>W1511388741
JSWJ01000001
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
179386
179471
+
Leu
TAA
[ENA]
¡û
>W1511388818
JSWK01000010
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
179408
179493
+
Leu
TAA
[ENA]
¡û
>W1511482549
JWLC01000001
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
65816
65731
-
Leu
TAA
[ENA]
¡û
>W1511482606
JWLD01000007
Alphaproteobacteria
Leisingera sp. ANG-Vp [JWLD]
126050
126135
+
Leu
TAA
[ENA]
¡û
>W1511482677
JWLE01000010
Alphaproteobacteria
Leisingera sp. ANG-DT [JWLE]
10700
10615
-
Leu
TAA
[ENA]
¡û
>W1511482720
JWLF01000004
Alphaproteobacteria
Leisingera sp. ANG-S3 [JWLF]
524940
524855
-
Leu
TAA
[ENA]
¡û
>W1511482768
JWLG01000009
Alphaproteobacteria
Leisingera sp. ANG-M6 [JWLG]
213665
213750
+
Leu
TAA
[ENA]
¡û
>W1511482799
JWLH01000001
Alphaproteobacteria
Leisingera sp. ANG-S5 [JWLH]
352649
352734
+
Leu
TAA
[ENA]
¡û
>W1511482890
JWLI01000017
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
172272
172357
+
Leu
TAA
[ENA]
¡û
>W1511483042
JWLM01000006
Alphaproteobacteria
Leisingera sp. ANG-S [JWLM]
172193
172278
+
Leu
TAA
[ENA]
¡û
>W11157625
AFCF01000028
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
10604
10519
-
Leu
TAA
[ENA]
¡û
>C121003778
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
1279378
1279463
+
Leu
TAA
[Ensembl]
¡û
>C121003836
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
1220885
1220970
+
Leu
TAA
-
¡û
>W1610016159
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
382327
382242
-
Leu
TAA
[ENA]
¡û
>W1610093074
CYSR01000036
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
11986
11901
-
Leu
TAA
[ENA]
¡û
>W1610789460
LOHU01000058
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
1451
1366
-
Leu
TAA
[ENA]
¡û
>W1610935555
LUKH01000006
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
12375
12290
-
Leu
TAA
[ENA]
¡û
>W1611021221
LYUZ01000046
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
11243
11158
-
Leu
TAA
[ENA]
¡û
>W1710013050
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
382327
382242
-
Leu
TAA
[ENA]
¡û
>W1710096282
CYSR01000036
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
11986
11901
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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