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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81039 (46 seq.)
>W1710876625
LMPJ01000010
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
357912
357829
-
Leu
GAG
[ENA]
¡û
>W1710877929
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
226892
226975
+
Leu
GAG
[ENA]
¡û
>W1710906946
LNOK01000013
Bacteroidota
Elizabethkingia ursingii 4 [LNOK]
155849
155932
+
Leu
GAG
[ENA]
¡û
>W1711073349
LSIL01000349
Bacteroidota
Chryseobacterium sp. CCH4-E10 [LSIL]
91
176
+
Leu
GAG
[ENA]
¡û
>W131170815
ARFT01000012
Bacteroidota
Riemerella columbina DSM 16469 [ARFT]
27635
27718
+
Leu
GAG
[ENA]
¡û
>W1711301476
MAHX01000013
Bacteroidota
Elizabethkingia occulta G4070 [MAHX]
196147
196230
+
Leu
GAG
[ENA]
¡û
>W1711301694
MAIC01000014
Bacteroidota
Elizabethkingia ursingii 4 [MAIC]
114315
114398
+
Leu
GAG
[ENA]
¡û
>W1711324462
MBDR01000004
Bacteroidota
Elizabethkingia occulta F8124 [MBDR]
79932
79849
-
Leu
GAG
[ENA]
¡û
>W1711324506
MBDS01000002
Bacteroidota
Elizabethkingia ursingii C1558 [MBDS]
412218
412135
-
Leu
GAG
[ENA]
¡û
>W1711385054
MEDR01000032
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
91789
91704
-
Leu
GAG
[ENA]
¡û
>C171048260
CP016377
Bacteroidota
Elizabethkingia ursingii G4123 [CP016377]
2772357
2772440
+
Leu
GAG
-
¡û
>W141223071
BACY01000136
Bacteroidota
Flavobacterium sp. B17 [BACY]
2677
2594
-
Leu
GAG
[ENA]
¡û
>W141289848
JARQ01000010
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
29264
29179
-
Leu
GAG
[ENA]
¡û
>W141291539
JASZ01000256
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
180
93
-
Leu
GAG
[ENA]
¡û
>WENV170009862
APMI01004204
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1943
2028
+
Leu
GAG
[ENA]
¢þ
>C181225801
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2455158
2455241
+
Leu
GAG
-
¡û
>C191115164
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
3403906
3403989
+
Leu
GAG
-
¡û
>C191115213
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
1062977
1063060
+
Leu
GAG
-
¡û
>C191115291
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
3699261
3699344
+
Leu
GAG
-
¡û
>C191116113
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1815484
1815401
-
Leu
GAG
-
¡û
>C191116131
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1207825
1207908
+
Leu
GAG
-
¡û
>C191120914
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1972813
1972730
-
Leu
GAG
-
¡û
>C191120930
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
856346
856429
+
Leu
GAG
-
¡û
>C191181566
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
778496
778413
-
Leu
GAG
-
¡û
>W1911701714
QNVS01000014
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
53427
53344
-
Leu
GAG
[ENA]
¡û
>W1911702014
QNVW01000015
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
18203
18286
+
Leu
GAG
[ENA]
¡û
>W1810071748
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1484509
1484592
+
Leu
GAG
[ENA]
¡û
>W1810758140
QPIE01000001
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
224292
224209
-
Leu
GAG
[ENA]
¡û
>W1511432777
JUGT01000011
Bacteroidota
Chryseobacterium sp. YR561 [JUGT]
472980
472897
-
Leu
GAG
[ENA]
¡û
>W1511432942
JUGW01000011
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
37726
37809
+
Leu
GAG
[ENA]
¡û
>W1511433344
JUHD01000011
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
74859
74776
-
Leu
GAG
[ENA]
¡û
>W1610634187
LIRF01000004
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
557739
557656
-
Leu
GAG
[ENA]
¡û
>W1610738971
LMPJ01000010
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
357912
357829
-
Leu
GAG
[ENA]
¡û
>W1610740275
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
226892
226975
+
Leu
GAG
[ENA]
¡û
>W1610765960
LNOK01000013
Bacteroidota
Elizabethkingia ursingii 4 [LNOK]
155849
155932
+
Leu
GAG
[ENA]
¡û
>W1610912654
LSIL01000349
Bacteroidota
Chryseobacterium sp. CCH4-E10 [LSIL]
91
176
+
Leu
GAG
[ENA]
¡û
>W1710514148
FNAS01000006
Bacteroidota
Riemerella columbipharyngis [FNAS]
40734
40817
+
Leu
GAG
[ENA]
¡û
>W1710518213
FNDW01000004
Bacteroidota
Chryseobacterium taeanense [FNDW]
201616
201699
+
Leu
GAG
[ENA]
¡û
>W1710538668
FNUS01000006
Bacteroidota
Halpernia humi [FNUS]
135721
135804
+
Leu
GAG
[ENA]
¡û
>W1710584493
FQVO01000018
Bacteroidota
Chryseobacterium takakiae [FQVO]
50483
50568
+
Leu
GAG
[ENA]
¡û
>W1710590235
FRAV01000009
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
69585
69502
-
Leu
GAG
[ENA]
¡û
>W1710595006
FSRQ01000004
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
100715
100798
+
Leu
GAG
[ENA]
¡û
>W1710595905
FTMF01000016
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
48549
48466
-
Leu
GAG
[ENA]
¡û
>W1710600170
FTPU01000003
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
76042
76125
+
Leu
GAG
[ENA]
¡û
>W1710603573
FUZE01000002
Bacteroidota
Chryseobacterium balustinum [FUZE]
312022
311939
-
Leu
GAG
[ENA]
¡û
>W1710768564
LIRF01000004
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
557739
557656
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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