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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81144 (60 seq.)
>W1710787578
LJJX01000027
Actinomycetota
Frankia sp. CpI1-P [LJJX]
50298
50381
+
Leu
CAG
[ENA]
¡û
>W1711053975
LRTK01000143
Actinomycetota
Frankia sp. EI5c [LRTK]
1176
1261
+
Leu
CAG
[ENA]
¡û
>W1711317120
MAXA01000214
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
44315
44230
-
Leu
CAG
[ENA]
¡û
>W1711328854
MBLM01000163
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
261975
261890
-
Leu
CAG
[ENA]
¡û
>W1711328988
MBLP01000002
Actinomycetota
Frankia sp. CgIS1 [MBLP]
199
116
-
Leu
CAG
[ENA]
¡û
>W1711499921
MKQR01000001
Actinomycetota
Actinokineospora bangkokensis [MKQR]
32140
32223
+
Leu
CAG
[ENA]
¡û
>W1711603579
MOMD01000067
Actinomycetota
Frankia sp. CcI156 [MOMD]
33521
33604
+
Leu
CAG
[ENA]
¡û
>W1711603615
MOME01000048
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
38673
38758
+
Leu
CAG
[ENA]
¡û
>W1711689400
MSEA01000239
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
10193
10110
-
Leu
CAG
[ENA]
¡û
>W1711694718
MSIF01000022
Actinomycetota
Actinophytocola xinjiangensis [MSIF]
64312
64397
+
Leu
CAG
[ENA]
¡û
>W1711724971
MTQP01000068
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
465425
465340
-
Leu
CAG
[ENA]
¡û
>W131168051
ARDT01000025
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
59910
59995
+
Leu
CAG
[ENA]
¡û
>W131170097
ARFH01000003
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
37458
37373
-
Leu
CAG
[ENA]
¡û
>C009365
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
7355029
7354947
-
Leu
CAG
[Ensembl]
¡û
>C009562
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
5295216
5295134
-
Leu
CAG
[Ensembl]
¡û
>WENV180016988
FSWJ01000192
[FSWJ] metagenome; soil
998
915
-
Leu
CAG
[ENA]
¢þ
>W141000345
ACQP01000256
Actinomycetota
Kutzneria sp. 744 [ACQP]
2965
2882
-
Leu
CAG
[ENA]
¡û
>w007109
AAII01000013
Actinomycetota
Frankia sp. EAN1pec [AAII]
108769
108687
-
Leu
CAG
[ENA]
¡û
>WENV180691506
OCZS010140903
[OCZS] soil metagenome; soil
172
88
-
Leu
CAG
[ENA]
¢þ
>WENV180695726
OCZS013883416
[OCZS] soil metagenome; soil
6
92
+
Leu
CAG
[ENA]
¢þ
>WENV181144858
OEHO01113246
[OEHO] metagenome; unknown
96
179
+
Leu
CAG
[ENA]
¢þ
>WENV181155178
OEID01019977
[OEID] soil metagenome; soil
100
183
+
Leu
CAG
[ENA]
¢þ
>WENV181165676
OEIS01091326
[OEIS] soil metagenome; soil
194
277
+
Leu
CAG
[ENA]
¢þ
>WENV181192608
OEPS010831454
[OEPS] soil metagenome; soil
140
223
+
Leu
CAG
[ENA]
¢þ
>WENV181292224
OFHD01059202
[OFHD] soil metagenome; Clay
90
176
+
Leu
CAG
[ENA]
¢þ
>W141195282
AYTZ01000003
Actinomycetota
Frankia sp. CcI6 [AYTZ]
177828
177911
+
Leu
CAG
[ENA]
¡û
>C08005056
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
170197
170282
+
Leu
CAG
[Ensembl]
¡û
>W141403426
JDWE01000006
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
84968
84885
-
Leu
CAG
[ENA]
¡û
>W141427376
JENI01000065
Actinomycetota
Frankia casuarinae Thr [JENI]
199
116
-
Leu
CAG
[ENA]
¡û
>WENV170648474
JRHI01000494
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
7444
7361
-
Leu
CAG
[ENA]
¢þ
>W09104996
AAOL01000002
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
554994
555079
+
Leu
CAG
[ENA]
¡û
>W141756301
JNXC01000001
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
201879
201794
-
Leu
CAG
[ENA]
¡û
>W141758373
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
76720
76635
-
Leu
CAG
[ENA]
¡û
>W141803569
JPGU01000003
Actinomycetota
Frankia sp. CeD [JPGU]
86338
86421
+
Leu
CAG
[ENA]
¡û
>W1910546354
FZMO01000435
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
392
309
-
Leu
CAG
[ENA]
¡û
>W1911504319
OESX01000435
Actinomycetota
Frankia canadensis ARgP5 [OESX]
392
309
-
Leu
CAG
[ENA]
¡û
>W1911765420
QXCQ01000245
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
44794
44878
+
Leu
CAG
[ENA]
¡û
>W1810295964
PTIX01000006
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
374607
374690
+
Leu
CAG
[ENA]
¡û
>W1810393081
PYAX01000005
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
337462
337547
+
Leu
CAG
[ENA]
¡û
>W1810885759
QUNO01000004
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
180633
180716
+
Leu
CAG
[ENA]
¡û
>C151017612
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
30268
30351
+
Leu
CAG
[Ensembl]
¡û
>W10114043
ADGT01000013
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
38727
38812
+
Leu
CAG
[ENA]
¡û
>W10114195
ADGX01000127
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
15154
15069
-
Leu
CAG
[ENA]
¡û
>C11109393
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
216073
215988
-
Leu
CAG
[Ensembl]
¡û
>W11117379
ADGT01000013
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
38727
38812
+
Leu
CAG
[ENA]
¡û
>W11117531
ADGX01000127
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
15154
15069
-
Leu
CAG
[ENA]
¡û
>W1511479834
JWIO01000026
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
56443
56528
+
Leu
CAG
[ENA]
¡û
>W1511524738
JYFN01000026
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
50929
51012
+
Leu
CAG
[ENA]
¡û
>W121010802
AGJN01000090
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
20423
20340
-
Leu
CAG
[ENA]
¡û
>W121069979
AJWA01000082
Actinomycetota
Frankia sp. QA3 [AJWA]
106885
106968
+
Leu
CAG
[ENA]
¡û
>W1610163586
FAOZ01000014
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
46577
46662
+
Leu
CAG
[ENA]
¡û
>C131019790
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
31391
31474
+
Leu
CAG
[Ensembl]
¡û
>W1610507929
FLUV01000084
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
4567
4482
-
Leu
CAG
[ENA]
¡û
>W1610597128
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
418682
418767
+
Leu
CAG
[ENA]
¡û
>W1610651433
LJJX01000027
Actinomycetota
Frankia sp. CpI1-P [LJJX]
50298
50381
+
Leu
CAG
[ENA]
¡û
>W1610895163
LRTK01000143
Actinomycetota
Frankia sp. EI5c [LRTK]
1176
1261
+
Leu
CAG
[ENA]
¡û
>W1710165253
FAOZ01000014
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
46577
46662
+
Leu
CAG
[ENA]
¡û
>W1710524897
FNJB01000019
Actinomycetota
Actinokineospora alba album [FNJB]
68464
68381
-
Leu
CAG
[ENA]
¡û
>W1710530132
FNON01000002
Actinomycetota
Amycolatopsis xylanica [FNON]
1120473
1120558
+
Leu
CAG
[ENA]
¡û
>W1710718287
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
418682
418767
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK