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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81228 (18 seq.)
>A171001206
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
411686
411768
+
Leu
GAG
-
¡û
>A171003809
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
372763
372845
+
Leu
GAG
-
¡û
>A171003811
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
492759
492841
+
Leu
CAG
-
¡û
>At0608
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
398197
398279
+
Leu
GAG
[Ensembl]
¡û
>At0610
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
515561
515643
+
Leu
CAG
[Ensembl]
¡û
>WENV170675817
LDZQ01000608
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1524
1607
+
Leu
CAG
[ENA]
¢þ
>WENV170675822
LDZQ01000639
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1075
993
-
Leu
GAG
[ENA]
¢þ
>WENV170676388
LDZR01002378
[LDZR] terrestrial metagenome; oil reservoir sample K2
1524
1607
+
Leu
CAG
[ENA]
¢þ
>WENV170676403
LDZR01002443
[LDZR] terrestrial metagenome; oil reservoir sample K2
6425
6507
+
Leu
GAG
[ENA]
¢þ
>WENV170779151
LZCG01002260
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
376
458
+
Leu
GAG
[ENA]
¢þ
>WENV170779238
LZQN01000038
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
1474
1392
-
Leu
GAG
[ENA]
¢þ
>W1910200353
FJNF01000066
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
58
140
+
Leu
GAG
[ENA]
¡û
>W1910200355
FJNF01000109
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
1365
1448
+
Leu
CAG
[ENA]
¡û
>W1610001616
ACYZ01000022
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
27672
27754
+
Leu
GAG
[ENA]
¡û
>W1610612344
LGEQ01000035
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
1524
1607
+
Leu
CAG
[ENA]
¡û
>W1610612349
LGEQ01000066
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
1075
993
-
Leu
GAG
[ENA]
¡û
>W1610612606
LGEX01000020
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
1524
1607
+
Leu
CAG
[ENA]
¡û
>W1610612621
LGEX01000085
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
6425
6507
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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