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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81399 (114 seq.)
>W1711250234
LYMV01000128
Alphaproteobacteria
Rickettsia sp. wb [LYMV]
17145
17060
-
Tyr
GTA
[ENA]
¡û
>W1711250281
LYMW01000217
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
17141
17056
-
Tyr
GTA
[ENA]
¡û
>C171035039
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
929320
929405
+
Tyr
GTA
-
¡û
>C171035093
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
176995
176910
-
Tyr
GTA
-
¡û
>C171086333
CP018913
Alphaproteobacteria
Rickettsia rickettsii Iowa [CP018913]
944034
943949
-
Tyr
GTA
-
¡û
>C171086367
CP018914
Alphaproteobacteria
Rickettsia rickettsii Iowa [CP018914]
944045
943960
-
Tyr
GTA
-
¡û
>W131045796
AMRT01000004
Alphaproteobacteria
Rickettsia japonica YH [AMRT]
29136
29051
-
Tyr
GTA
[ENA]
¡û
>W131111726
APMN01000003
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
11016
11101
+
Tyr
GTA
[ENA]
¡û
>W131111768
APMO01000005
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
52135
52050
-
Tyr
GTA
[ENA]
¡û
>C018299
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
1155452
1155367
-
Tyr
GTA
[Ensembl]
¡û
>C018337
AE006914
Alphaproteobacteria
Rickettsia conorii str. Malish 7 [AE006914]
936020
935935
-
Tyr
GTA
[Ensembl]
¡û
>C018560
CP000053
Alphaproteobacteria
Rickettsia felis URRWXCal2 URRWXCal2; California 2 [CP000053]
303850
303935
+
Tyr
GTA
[Ensembl]
¡û
>C019093
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
821991
821906
-
Tyr
GTA
[Ensembl]
¡û
>C019373
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
830157
830072
-
Tyr
GTA
[Ensembl]
¡û
>w021489
AAVR01000001
Alphaproteobacteria
Rickettsia massiliae MTU5 [AAVR]
1027367
1027285
-
Tyr
GTA
[ENA]
¡û
>w020529
AAUY01000001
Alphaproteobacteria
Rickettsia africae ESF-5 [AAUY]
944255
944173
-
Tyr
GTA
[ENA]
¡û
>w017274
AARC01000001
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [AARC]
386848
386933
+
Tyr
GTA
[ENA]
¡û
>w005075
AAFF01000001
Alphaproteobacteria
Rickettsia canadensis str. McKiel [AAFF]
880504
880422
-
Tyr
GTA
[ENA]
¡û
>w005047
AAFE01000001
Alphaproteobacteria
Rickettsia akari str. Hartford [AAFE]
915596
915514
-
Tyr
GTA
[ENA]
¡û
>w003255
AADJ01000001
Alphaproteobacteria
Rickettsia rickettsii [AADJ]
933215
933133
-
Tyr
GTA
[ENA]
¡û
>w002993
AABW01000001
Alphaproteobacteria
Rickettsia sibirica 246 [AABW]
992912
992997
+
Tyr
GTA
[ENA]
¡û
>W141147970
AWXL01000021
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
38408
38323
-
Tyr
GTA
[ENA]
¡û
>C08008067
CP000409
Alphaproteobacteria
Rickettsia canadensis str. McKiel [CP000409]
880504
880422
-
Tyr
GTA
[Ensembl]
¡û
>C08008379
CP000848
Alphaproteobacteria
Rickettsia rickettsii str. 'Sheila Smith' [CP000848]
933215
933133
-
Tyr
GTA
[Ensembl]
¡û
>C08008020
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
386848
386933
+
Tyr
GTA
[Ensembl]
¡û
>C08007941
CP000847
Alphaproteobacteria
Rickettsia akari str. Hartford [CP000847]
915596
915514
-
Tyr
GTA
[Ensembl]
¡û
>C08008259
CP000683
Alphaproteobacteria
Rickettsia massiliae MTU5 [CP000683]
1027367
1027285
-
Tyr
GTA
[Ensembl]
¡û
>W141255349
CBUA010000060
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
6779
6864
+
Tyr
GTA
[ENA]
¡û
>C08008345
CP000766
Alphaproteobacteria
Rickettsia rickettsii str. Iowa [CP000766]
943995
943913
-
Tyr
GTA
[Ensembl]
¡û
>W141264814
CCER01000003
Alphaproteobacteria
Rickettsia aeschlimannii [CCER]
61768
61683
-
Tyr
GTA
[ENA]
¡û
>W141266203
CCMG01000008
Alphaproteobacteria
Rickettsia tamurae [CCMG]
118906
118821
-
Tyr
GTA
[ENA]
¡û
>W141464099
JFKF01000025
Alphaproteobacteria
Rickettsia tamurae ISO7 [JFKF]
1406
1491
+
Tyr
GTA
[ENA]
¡û
>W09127571
ACLC01000066
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes scapularis [ACLC]
144609
144524
-
Tyr
GTA
[ENA]
¡û
>C181002278
AP017572
Alphaproteobacteria
Rickettsia japonica DT-1 [AP017572]
955264
955179
-
Tyr
GTA
-
¡û
>C181002311
AP017573
Alphaproteobacteria
Rickettsia japonica HH-1 [AP017573]
955176
955091
-
Tyr
GTA
-
¡û
>C181002344
AP017574
Alphaproteobacteria
Rickettsia japonica HH06154 [AP017574]
955262
955177
-
Tyr
GTA
-
¡û
>C181002377
AP017575
Alphaproteobacteria
Rickettsia japonica HH07124 [AP017575]
955243
955158
-
Tyr
GTA
-
¡û
>C181002410
AP017576
Alphaproteobacteria
Rickettsia japonica HH07167 [AP017576]
955264
955179
-
Tyr
GTA
-
¡û
>C181002443
AP017577
Alphaproteobacteria
Rickettsia japonica MZ08014 [AP017577]
955263
955178
-
Tyr
GTA
-
¡û
>C181002476
AP017578
Alphaproteobacteria
Rickettsia japonica Nakase [AP017578]
955264
955179
-
Tyr
GTA
-
¡û
>C181002509
AP017579
Alphaproteobacteria
Rickettsia japonica OHH-1 [AP017579]
954721
954636
-
Tyr
GTA
-
¡û
>C181002542
AP017580
Alphaproteobacteria
Rickettsia japonica PO-1 [AP017580]
955176
955091
-
Tyr
GTA
-
¡û
>C181002575
AP017581
Alphaproteobacteria
Rickettsia japonica Tsuneishi [AP017581]
955264
955179
-
Tyr
GTA
-
¡û
>C181002608
AP017602
Alphaproteobacteria
Rickettsia japonica YH_M [AP017602]
955264
955179
-
Tyr
GTA
-
¡û
>C181019109
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
1063077
1063162
+
Tyr
GTA
-
¡û
>C191083873
CP032049
Alphaproteobacteria
Rickettsia japonica LA4/2015 [CP032049]
954731
954646
-
Tyr
GTA
-
¡û
>C191176582
CP040325
Alphaproteobacteria
Rickettsia parkeri Atlantic Rainforest [CP040325]
1017897
1017812
-
Tyr
GTA
-
¡û
>C191225766
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
829809
829724
-
Tyr
GTA
-
¡û
>C09108641
CP001612
Alphaproteobacteria
Rickettsia africae ESF-5 [CP001612]
946083
945998
-
Tyr
GTA
[Ensembl]
¡û
>C09108976
CP001227
Alphaproteobacteria
Rickettsia peacockii str. Rustic [CP001227]
1053353
1053268
-
Tyr
GTA
[Ensembl]
¡û
>W1911517949
OFAL01000006
Alphaproteobacteria
Rickettsia fournieri AUS118 [OFAL]
758469
758554
+
Tyr
GTA
[ENA]
¡û
>C151008551
CP006009
Alphaproteobacteria
Rickettsia rickettsii str. R [CP006009]
932663
932578
-
Tyr
GTA
[Ensembl]
¡û
>C151008585
CP006010
Alphaproteobacteria
Rickettsia rickettsii str. Morgan [CP006010]
944736
944651
-
Tyr
GTA
[Ensembl]
¡û
>C151094946
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
1156658
1156573
-
Tyr
GTA
-
¡û
>C151104111
LN794217
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [LN794217]
1299009
1298924
-
Tyr
GTA
[Ensembl]
¡û
>W1510060664
CCXM01000001
Alphaproteobacteria
Rickettsia hoogstraalii Croatica [CCXM]
384832
384747
-
Tyr
GTA
[ENA]
¡û
>C11118583
CP002912
Alphaproteobacteria
Rickettsia conorii subsp. heilongjiangensis 054 [CP002912]
952351
952266
-
Tyr
GTA
[Ensembl]
¡û
>C11118805
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
821820
821735
-
Tyr
GTA
[Ensembl]
¡û
>W1511365697
JSEM01000003
Alphaproteobacteria
Rickettsia felis str. LSU [JSEM]
145514
145429
-
Tyr
GTA
[ENA]
¡û
>W1511489425
JWSW01000012
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
7834
7919
+
Tyr
GTA
[ENA]
¡û
>W1511574245
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
535101
535016
-
Tyr
GTA
[ENA]
¡û
>W1511574268
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
1379150
1379065
-
Tyr
GTA
[ENA]
¡û
>W1511574645
LAOB01000002
Alphaproteobacteria
Rickettsia hoogstraalii str. RCCE3 [LAOB]
315517
315432
-
Tyr
GTA
[ENA]
¡û
>W1511574685
LAOC01000001
Alphaproteobacteria
Rickettsia rhipicephali str. Ect [LAOC]
73348
73263
-
Tyr
GTA
[ENA]
¡û
>W1511574859
LAOH01000059
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
70575
70490
-
Tyr
GTA
[ENA]
¡û
>W1511574884
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
895755
895670
-
Tyr
GTA
[ENA]
¡û
>W1511574900
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
63890
63975
+
Tyr
GTA
[ENA]
¡û
>W1511574937
LAOK01000001
Alphaproteobacteria
Rickettsia parkeri str. Grand Bay [LAOK]
468013
468098
+
Tyr
GTA
[ENA]
¡û
>W1511574993
LAOL01000001
Alphaproteobacteria
Rickettsia parkeri str. AT#24 [LAOL]
298493
298408
-
Tyr
GTA
[ENA]
¡û
>W1511575049
LAOO01000001
Alphaproteobacteria
Rickettsia parkeri str. Tate's Hell [LAOO]
424523
424608
+
Tyr
GTA
[ENA]
¡û
>W1511575106
LAOP01000001
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes pacificus of Ixodes pacificus Humboldt [LAOP]
87288
87203
-
Tyr
GTA
[ENA]
¡û
>W1511575118
LAOQ01000002
Alphaproteobacteria
Rickettsia argasii T170-B [LAOQ]
149154
149239
+
Tyr
GTA
[ENA]
¡û
>C121000193
AP011533
Alphaproteobacteria
Rickettsia japonica YH [AP011533]
955610
955525
-
Tyr
GTA
[Ensembl]
¡û
>C121002589
CP002428
Alphaproteobacteria
Rickettsia slovaca 13-B [CP002428]
945857
945772
-
Tyr
GTA
[Ensembl]
¡û
>C121010385
CP003304
Alphaproteobacteria
Rickettsia canadensis str. CA410 [CP003304]
870623
870538
-
Tyr
GTA
[Ensembl]
¡û
>C121010400
CP003305
Alphaproteobacteria
Rickettsia rickettsii str. Brazil [CP003305]
236324
236409
+
Tyr
GTA
[Ensembl]
¡û
>C121010456
CP003306
Alphaproteobacteria
Rickettsia rickettsii str. Colombia [CP003306]
944160
944075
-
Tyr
GTA
[Ensembl]
¡û
>C121010490
CP003307
Alphaproteobacteria
Rickettsia rickettsii str. Arizona [CP003307]
944269
944184
-
Tyr
GTA
[Ensembl]
¡û
>C121010525
CP003308
Alphaproteobacteria
Rickettsia philipii str. 364D [CP003308]
961171
961086
-
Tyr
GTA
[Ensembl]
¡û
>C121010557
CP003309
Alphaproteobacteria
Rickettsia rickettsii str. Hino [CP003309]
944750
944665
-
Tyr
GTA
[Ensembl]
¡û
>C121010588
CP003311
Alphaproteobacteria
Rickettsia rickettsii str. Hlp#2 [CP003311]
945819
945734
-
Tyr
GTA
[Ensembl]
¡û
>C121010793
CP003318
Alphaproteobacteria
Rickettsia rickettsii str. Hauke [CP003318]
944632
944547
-
Tyr
GTA
[Ensembl]
¡û
>C121010809
CP003319
Alphaproteobacteria
Rickettsia massiliae str. AZT80 [CP003319]
518729
518814
+
Tyr
GTA
[Ensembl]
¡û
>C121011212
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
1148394
1148309
-
Tyr
GTA
[Ensembl]
¡û
>C121011235
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
500831
500916
+
Tyr
GTA
[Ensembl]
¡û
>C121011284
CP003340
Alphaproteobacteria
Rickettsia montanensis str. OSU 85-930 [CP003340]
393895
393810
-
Tyr
GTA
[Ensembl]
¡û
>C121011317
CP003341
Alphaproteobacteria
Rickettsia parkeri str. Portsmouth [CP003341]
971739
971654
-
Tyr
GTA
[Ensembl]
¡û
>C121011347
CP003342
Alphaproteobacteria
Rickettsia rhipicephali str. 3-7-female6-CWPP [CP003342]
1037447
1037362
-
Tyr
GTA
[Ensembl]
¡û
>C121011781
CP003375
Alphaproteobacteria
Rickettsia slovaca str. D-CWPP [CP003375]
945860
945775
-
Tyr
GTA
[Ensembl]
¡û
>C121012173
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
820025
819940
-
Tyr
GTA
[Ensembl]
¡û
>C121012206
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
821903
821818
-
Tyr
GTA
[Ensembl]
¡û
>C121012239
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
821902
821817
-
Tyr
GTA
[Ensembl]
¡û
>C121012272
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
820045
819960
-
Tyr
GTA
[Ensembl]
¡û
>C121012312
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
52134
52049
-
Tyr
GTA
[Ensembl]
¡û
>C121012338
CP003396
Alphaproteobacteria
Rickettsia prowazekii str. RpGvF24 [CP003396]
822285
822200
-
Tyr
GTA
[Ensembl]
¡û
>C121012369
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
830253
830168
-
Tyr
GTA
[Ensembl]
¡û
>C121012402
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
830821
830736
-
Tyr
GTA
[Ensembl]
¡û
>C161030395
CP010969
Alphaproteobacteria
Rickettsia conorii subsp. raoultii Khabarovsk [CP010969]
1006700
1006615
-
Tyr
GTA
[Ensembl]
¡û
>C161051811
CP013133
Alphaproteobacteria
Rickettsia rhipicephali HJ#5 [CP013133]
401373
401458
+
Tyr
GTA
[Ensembl]
¡û
>C161078744
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
821981
821896
-
Tyr
GTA
-
¡û
>W121033384
AHIZ01000006
Alphaproteobacteria
Rickettsia sibirica subsp. sibirica BJ-90 [AHIZ]
58272
58187
-
Tyr
GTA
[ENA]
¡û
>W121044094
AHZB01000018
Alphaproteobacteria
Rickettsia sibirica subsp. mongolitimonae HA-91 [AHZB]
130654
130739
+
Tyr
GTA
[ENA]
¡û
>W121045256
AICO01000001
Alphaproteobacteria
Rickettsia helvetica C9P9 [AICO]
463897
463982
+
Tyr
GTA
[ENA]
¡û
>W121061879
AJHC01000007
Alphaproteobacteria
Rickettsia conorii subsp. indica ITTR [AJHC]
28389
28304
-
Tyr
GTA
[ENA]
¡û
>W121067873
AJTT01000005
Alphaproteobacteria
Rickettsia honei RB [AJTT]
76620
76705
+
Tyr
GTA
[ENA]
¡û
>W121068495
AJUR01000016
Alphaproteobacteria
Rickettsia conorii subsp. caspia A-167 [AJUR]
58749
58664
-
Tyr
GTA
[ENA]
¡û
>W121069167
AJVP01000027
Alphaproteobacteria
Rickettsia conorii subsp. israelensis ISTT CDC1 [AJVP]
57303
57218
-
Tyr
GTA
[ENA]
¡û
>W121070032
AJWD01000108
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
17085
17000
-
Tyr
GTA
[ENA]
¡û
>W121102329
AKVZ01000027
Alphaproteobacteria
Rickettsia australis str. Phillips [AKVZ]
35861
35776
-
Tyr
GTA
[ENA]
¡û
>C131014577
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
473575
473660
+
Tyr
GTA
[Ensembl]
¡û
>C131014616
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
1057162
1057247
+
Tyr
GTA
[Ensembl]
¡û
>W1610596657
LECS01000004
Alphaproteobacteria
Rickettsia endosymbiont of Proechinophthirus fluctus [LECS]
670413
670328
-
Tyr
GTA
[ENA]
¡û
>WENV077643
AAFX01080170
Soil microbial communities from Minnesota Farm
540
625
+
Tyr
GTA
[ENA]
>W1710717662
LECS01000004
Alphaproteobacteria
Rickettsia endosymbiont of Proechinophthirus fluctus [LECS]
670413
670328
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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