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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81576 (75 seq.)
>W131051994
AMYG01000052
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
119
34
-
Tyr
GTA
[ENA]
¡û
>W131052014
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
6004
6089
+
Tyr
GTA
[ENA]
¡û
>W131167546
ARDJ01000005
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
51766
51851
+
Tyr
GTA
[ENA]
¡û
>W131167591
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
90538
90453
-
Tyr
GTA
[ENA]
¡û
>w010202
AAKQ01000058
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
8127
8214
+
Tyr
GTA
[ENA]
¡û
>W141092596
AVAF01000098
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
8723
8638
-
Tyr
GTA
[ENA]
¡û
>W141092615
AVAF01000150
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
43
128
+
Tyr
GTA
[ENA]
¡û
>WENV181226135
OFDK01000081
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
27815
27730
-
Tyr
GTA
[ENA]
¢þ
>WENV181226268
OFDK01000480
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2976
3061
+
Tyr
GTA
[ENA]
¢þ
>C08010934
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
458426
458511
+
Tyr
GTA
[Ensembl]
¡û
>C08010957
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
932143
932228
+
Tyr
GTA
[Ensembl]
¡û
>C08011043
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
461127
461212
+
Tyr
GTA
[Ensembl]
¡û
>C08011065
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1834070
1833988
-
Tyr
GTA
[Ensembl]
¡û
>W141276481
JADV01000008
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
61819
61734
-
Tyr
GTA
[ENA]
¡û
>W141276504
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
1070
1155
+
Tyr
GTA
[ENA]
¡û
>WENV170675628
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
226911
226826
-
Tyr
GTA
[ENA]
¢þ
>WENV170675639
LDZP01000171
[LDZP] terrestrial metagenome; oil reservoir sample I1
58602
58687
+
Tyr
GTA
[ENA]
¢þ
>WENV170676885
LDZS01003001
[LDZS] terrestrial metagenome; oil reservoir sample K3
3921
3836
-
Tyr
GTA
[ENA]
¢þ
>WENV170676896
LDZS01003104
[LDZS] terrestrial metagenome; oil reservoir sample K3
2402
2487
+
Tyr
GTA
[ENA]
¢þ
>W09133543
ACPF01000038
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
1678
1763
+
Tyr
GTA
[ENA]
¡û
>W09133548
ACPF01000041
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
21103
21018
-
Tyr
GTA
[ENA]
¡û
>W09134132
ACQZ01000012
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
47890
47975
+
Tyr
GTA
[ENA]
¡û
>W09134146
ACQZ01000030
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
21929
21844
-
Tyr
GTA
[ENA]
¡û
>W09135030
ACVH01000001
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
72501
72416
-
Tyr
GTA
[ENA]
¡û
>W09135074
ACVH01000067
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
764
849
+
Tyr
GTA
[ENA]
¡û
>W09135141
ACVK01000003
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
22807
22892
+
Tyr
GTA
[ENA]
¡û
>W09135174
ACVK01000035
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
21251
21166
-
Tyr
GTA
[ENA]
¡û
>W09135848
ACXP01000008
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
16708
16623
-
Tyr
GTA
[ENA]
¡û
>W09135882
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
2661
2746
+
Tyr
GTA
[ENA]
¡û
>C191108100
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1021036
1021121
+
Tyr
GTA
-
¡û
>C191108127
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2690234
2690149
-
Tyr
GTA
-
¡û
>C151045288
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
466408
466493
+
Tyr
GTA
[Ensembl]
¡û
>C151045321
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1875850
1875765
-
Tyr
GTA
[Ensembl]
¡û
>W10105913
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
92160
92075
-
Tyr
GTA
[ENA]
¡û
>W10105959
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
2719
2804
+
Tyr
GTA
[ENA]
¡û
>W10120476
ADXD01000008
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
12079
11994
-
Tyr
GTA
[ENA]
¡û
>W10120495
ADXD01000040
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
11303
11218
-
Tyr
GTA
[ENA]
¡û
>C10113374
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
507495
507580
+
Tyr
GTA
[Ensembl]
¡û
>C10113403
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1986448
1986363
-
Tyr
GTA
[Ensembl]
¡û
>C10113428
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
584179
584264
+
Tyr
GTA
[Ensembl]
¡û
>C10113459
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1919058
1918973
-
Tyr
GTA
[Ensembl]
¡û
>W11108236
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
92160
92075
-
Tyr
GTA
[ENA]
¡û
>W11108282
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
2719
2804
+
Tyr
GTA
[ENA]
¡û
>W1511275082
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1454179
1454094
-
Tyr
GTA
[ENA]
¡û
>W1511275115
JOOI01000003
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
121903
121988
+
Tyr
GTA
[ENA]
¡û
>C11122470
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
456543
456628
+
Tyr
GTA
[Ensembl]
¡û
>C11122492
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1826283
1826198
-
Tyr
GTA
[Ensembl]
¡û
>C11122694
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
498281
498366
+
Tyr
GTA
[Ensembl]
¡û
>C11122732
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1982238
1982153
-
Tyr
GTA
[Ensembl]
¡û
>C11123225
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
577047
577132
+
Tyr
GTA
[Ensembl]
¡û
>C11123256
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2253423
2253338
-
Tyr
GTA
[Ensembl]
¡û
>W11127085
ADXD01000008
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
12079
11994
-
Tyr
GTA
[ENA]
¡û
>W11127104
ADXD01000040
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
11303
11218
-
Tyr
GTA
[ENA]
¡û
>W11152638
AEYS01000003
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
43031
43116
+
Tyr
GTA
[ENA]
¡û
>W11152652
AEYS01000011
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
54010
53925
-
Tyr
GTA
[ENA]
¡û
>W1610043644
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
98329
98244
-
Tyr
GTA
[ENA]
¡û
>W1610043687
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
733
818
+
Tyr
GTA
[ENA]
¡û
>W121068075
AJUD01000002
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
25067
24982
-
Tyr
GTA
[ENA]
¡û
>W121068083
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
117532
117447
-
Tyr
GTA
[ENA]
¡û
>W1610612260
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
226911
226826
-
Tyr
GTA
[ENA]
¡û
>W1610612271
LGEO01000008
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
58602
58687
+
Tyr
GTA
[ENA]
¡û
>W1610613181
LGFN01000105
Bacillota
Caldanaerobacter subterraneus [LGFN]
3921
3836
-
Tyr
GTA
[ENA]
¡û
>W1610613192
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
2402
2487
+
Tyr
GTA
[ENA]
¡û
>W1710040804
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
98329
98244
-
Tyr
GTA
[ENA]
¡û
>W1710040847
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
733
818
+
Tyr
GTA
[ENA]
¡û
>W1710515335
FNBS01000061
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
6176
6091
-
Tyr
GTA
[ENA]
¡û
>W1710515342
FNBS01000077
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
1277
1362
+
Tyr
GTA
[ENA]
¡û
>W1710560362
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
6256
6341
+
Tyr
GTA
[ENA]
¡û
>W1710560378
FONI01000022
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
39788
39873
+
Tyr
GTA
[ENA]
¡û
>W1710583276
FQUR01000007
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
114265
114350
+
Tyr
GTA
[ENA]
¡û
>W1710583295
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
206030
205945
-
Tyr
GTA
[ENA]
¡û
>W1710733766
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
226911
226826
-
Tyr
GTA
[ENA]
¡û
>W1710733777
LGEO01000008
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
58602
58687
+
Tyr
GTA
[ENA]
¡û
>W1710734388
LGFN01000105
Bacillota
Caldanaerobacter subterraneus [LGFN]
3921
3836
-
Tyr
GTA
[ENA]
¡û
>W1710734399
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
2402
2487
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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