This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81636 (63 seq.)
>W1711187735
LWPS01000096
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
483402
483317
-
Leu
AAG
[ENA]
¡û
>W131001731
AGYK01000001
Bacillota
Clostridium butyricum 60E.3 [AGYK]
447761
447846
+
Leu
AAG
[ENA]
¡û
>W131110773
APKZ01000034
Bacillota
Clostridium butyricum DKU-01 [APKZ]
13492
13407
-
Leu
AAG
[ENA]
¡û
>W131156811
AQQF01000044
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
21418
21503
+
Leu
AAG
[ENA]
¡û
>W131232803
AUJN01000026
Bacillota
Clostridium butyricum AGR2140 [AUJN]
17587
17502
-
Leu
AAG
[ENA]
¡û
>C171021726
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
1402551
1402636
+
Leu
AAG
-
¡û
>C171047583
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
1086240
1086325
+
Leu
AAG
-
¡û
>WENV180124168
OASX01002811
[OASX] human gut metagenome; faeces
4230
4315
+
Leu
AAG
[ENA]
¢þ
>WENV180153126
OAUR01001597
[OAUR] human gut metagenome; faeces
1260
1345
+
Leu
AAG
[ENA]
¢þ
>WENV180278744
OBHX01007637
[OBHX] metagenome; feces
4006
4091
+
Leu
AAG
[ENA]
¢þ
>WENV180279815
OBHX01101908
[OBHX] metagenome; feces
585
500
-
Leu
AAG
[ENA]
¢þ
>WENV180333488
OBLF01000928
[OBLF] metagenome; feces
2768
2853
+
Leu
AAG
[ENA]
¢þ
>WENV180349378
OBLO01039494
[OBLO] metagenome; feces
174
259
+
Leu
AAG
[ENA]
¢þ
>WENV180504932
OCAO01000254
[OCAO] human gut metagenome; faeces
24153
24068
-
Leu
AAG
[ENA]
¢þ
>WENV180506781
OCAS01008435
[OCAS] human gut metagenome; faeces
74
159
+
Leu
AAG
[ENA]
¢þ
>W08001320
ABDT01000054
Bacillota
Clostridium butyricum 5521 [ABDT]
49091
49009
-
Leu
AAG
[ENA]
¡û
>WENV181555114
OGIT01000026
[OGIT] metagenome; Human gut stool
80971
81056
+
Leu
AAG
[ENA]
¢þ
>WENV181798306
OGRV01000018
[OGRV] human gut metagenome; fecal sample 3 from infant 4
89942
90027
+
Leu
AAG
[ENA]
¢þ
>WENV181798848
OGRX01000542
[OGRX] human gut metagenome; fecal sample 2 from infant 8
2177
2092
-
Leu
AAG
[ENA]
¢þ
>WENV181801484
OGSB01000372
[OGSB] human gut metagenome; fecal sample 5 from infant 3
10217
10302
+
Leu
AAG
[ENA]
¢þ
>WENV181801947
OGSC01000472
[OGSC] human gut metagenome; fecal sample 8 from infant 5
10593
10678
+
Leu
AAG
[ENA]
¢þ
>WENV181805100
OGSH01000645
[OGSH] human gut metagenome; fecal sample 5 from infant 6
2194
2109
-
Leu
AAG
[ENA]
¢þ
>WENV181805402
OGSI01000442
[OGSI] human gut metagenome; fecal sample 4 from infant 8
1735
1650
-
Leu
AAG
[ENA]
¢þ
>WENV181805817
OGSJ01000628
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
10583
10668
+
Leu
AAG
[ENA]
¢þ
>WENV181807830
OGSQ01000318
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
7862
7777
-
Leu
AAG
[ENA]
¢þ
>WENV181809366
OGST01000025
[OGST] human gut metagenome; fecal sample 7 from infant 6
143501
143586
+
Leu
AAG
[ENA]
¢þ
>WENV181810611
OGSV01000395
[OGSV] human gut metagenome; fecal sample 4 from infant 3
10506
10591
+
Leu
AAG
[ENA]
¢þ
>WENV181811011
OGSX01001409
[OGSX] human gut metagenome; fecal sample 1 from infant 8
269
184
-
Leu
AAG
[ENA]
¢þ
>WENV181811280
OGSY01000513
[OGSY] human gut metagenome; fecal sample 5 from infant 8
10574
10659
+
Leu
AAG
[ENA]
¢þ
>WENV181811651
OGSZ01000216
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
7972
7887
-
Leu
AAG
[ENA]
¢þ
>WENV181813752
OGTD01000554
[OGTD] human gut metagenome; fecal sample 1 from infant 3
3366
3281
-
Leu
AAG
[ENA]
¢þ
>WENV181814372
OGTG01000061
[OGTG] human gut metagenome; fecal sample 1 from infant 4
89942
90027
+
Leu
AAG
[ENA]
¢þ
>WENV181815047
OGTI01000194
[OGTI] human gut metagenome; fecal sample 5 from infant 1
10199
10284
+
Leu
AAG
[ENA]
¢þ
>WENV181817508
OGTN01000312
[OGTN] human gut metagenome; fecal sample 5 from infant 4
15247
15332
+
Leu
AAG
[ENA]
¢þ
>WENV181818225
OGTS01000039
[OGTS] human gut metagenome; fecal sample 4 from infant 4
7920
7835
-
Leu
AAG
[ENA]
¢þ
>WENV181818661
OGTT01001015
[OGTT] human gut metagenome; fecal sample 6 from infant 8
2150
2065
-
Leu
AAG
[ENA]
¢þ
>WENV181818905
OGTU01000163
[OGTU] human gut metagenome; fecal sample 6 from infant 4
15229
15314
+
Leu
AAG
[ENA]
¢þ
>WENV181822993
OGUH01002012
[OGUH] human gut metagenome; fecal sample 3 from infant 3
207
122
-
Leu
AAG
[ENA]
¢þ
>W141206258
AZLX01000197
Bacillota
Clostridium butyricum DORA_1 [AZLX]
32937
33022
+
Leu
AAG
[ENA]
¡û
>W141259003
CBYK010000004
Bacillota
Clostridium butyricum [CBYK]
354195
354110
-
Leu
AAG
[ENA]
¡û
>WENV182847983
OKKE01001796
[OKKE] human gut metagenome; human gut
228
143
-
Leu
AAG
[ENA]
¢þ
>WENV182944796
OKVJ01001629
[OKVJ] human gut metagenome; human gut
501
416
-
Leu
AAG
[ENA]
¢þ
>WENV182952916
OKVX01000601
[OKVX] human gut metagenome; human gut
2371
2286
-
Leu
AAG
[ENA]
¢þ
>WENV183781006
PPYF01190214
[PPYF] human gut metagenome; stool from patient with Crohn's disease
217
132
-
Leu
AAG
[ENA]
¢þ
>C191171195
CP039702
Bacillota
Clostridium butyricum [CP039702]
1144015
1144100
+
Leu
AAG
-
¡û
>C191171342
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
841341
841256
-
Leu
AAG
-
¡û
>W09132868
ACOM01000005
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
2048817
2048732
-
Leu
AAG
[ENA]
¡û
>W1910637960
LRDH01000024
Bacillota
Clostridium butyricum 300064 [LRDH]
94920
95005
+
Leu
AAG
[ENA]
¡û
>W1810250551
PQCS01000117
Bacillota
Clostridium sp. 3-3 [PQCS]
2353
2268
-
Leu
AAG
[ENA]
¡û
>W1810805935
QRUG01000005
Bacillota
Clostridium butyricum AF25-25 [QRUG]
81378
81293
-
Leu
AAG
[ENA]
¡û
>W1511350215
JRMA01000012
Bacillota
Clostridium butyricum INCQS635 [JRMA]
15571
15486
-
Leu
AAG
[ENA]
¡û
>W1511365592
JSEG01000012
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
25425
25340
-
Leu
AAG
[ENA]
¡û
>W1511501359
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
883665
883750
+
Leu
AAG
[ENA]
¡û
>W1511554745
JZWE01000003
Bacillota
Clostridium sp. IBUN22A [JZWE]
26256
26341
+
Leu
AAG
[ENA]
¡û
>W1511554859
JZWF01000071
Bacillota
Clostridium sp. IBUN125C [JZWF]
420879
420794
-
Leu
AAG
[ENA]
¡û
>W1511554902
JZWG01000165
Bacillota
Clostridium sp. IBUN13A [JZWG]
41969
41884
-
Leu
AAG
[ENA]
¡û
>C161054162
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
1396035
1396120
+
Leu
AAG
-
¡û
>C161055915
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
1082621
1082706
+
Leu
AAG
-
¡û
>C161076429
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
1068330
1068415
+
Leu
AAG
-
¡û
>W1610627662
LIDW01000028
Bacillota
Clostridium butyricum [LIDW]
43266
43181
-
Leu
AAG
[ENA]
¡û
>W1630000757
ASPQ01000025
Bacillota
Clostridium butyricum CWBI1009 [ASPQ]
89274
89356
+
Pseudo
AAG
[ENA]
¡û
>WENV082839
BAAW01003652
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
1291
1378
+
Leu
AAG
[ENA]
>W1710758789
LIDW01000028
Bacillota
Clostridium butyricum [LIDW]
43266
43181
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK