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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81682 (31 seq.)
>W131235281
AULL01000012
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
443104
443187
+
Tyr
GTA
[ENA]
¡û
>W1711487715
MKGI01000075
Bacteroidota
Cloacibacterium normanense [MKGI]
73252
73169
-
Tyr
GTA
[ENA]
¡û
>W1711503229
MKTK01000011
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
6329
6412
+
Tyr
GTA
[ENA]
¡û
>W1712082017
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
110003
110086
+
Tyr
GTA
[ENA]
¡û
>WENV180283620
OBID01001137
[OBID] metagenome; sludge
7036
7119
+
Tyr
GTA
[ENA]
¢þ
>WENV181171425
OEIV010224653
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
162
79
-
Tyr
GTA
[ENA]
¢þ
>WENV181834745
OGVG01000298
[OGVG] freshwater metagenome; freshwater
4579
4662
+
Tyr
GTA
[ENA]
¢þ
>W141291530
JASZ01000012
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
4409
4492
+
Tyr
GTA
[ENA]
¡û
>WENV170010045
APMI01007416
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2234
2317
+
Tyr
GTA
[ENA]
¢þ
>WENV170658328
JTFP01087748
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
645
728
+
Tyr
GTA
[ENA]
¢þ
>C191025414
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2197597
2197514
-
Tyr
GTA
-
¡û
>C191116453
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1207536
1207619
+
Tyr
GTA
-
¡û
>C191120377
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
203699
203782
+
Tyr
GTA
-
¡û
>C191120436
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
648166
648083
-
Tyr
GTA
-
¡û
>C191156052
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1545700
1545783
+
Tyr
GTA
-
¡û
>C191211161
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1845061
1844978
-
Tyr
GTA
-
¡û
>C191212983
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2681536
2681619
+
Tyr
GTA
-
¡û
>W141802053
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
1088020
1088103
+
Tyr
GTA
[ENA]
¡û
>W1910933652
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475536
475453
-
Tyr
GTA
[ENA]
¡û
>C09106199
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
271837
271920
+
Tyr
GTA
[Ensembl]
¡û
>W1810304715
PTPZ01000009
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
58147
58064
-
Tyr
GTA
[ENA]
¡û
>W1511390846
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
66615
66698
+
Tyr
GTA
[ENA]
¡û
>W1511390898
JSYL01000010
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
20445
20362
-
Tyr
GTA
[ENA]
¡û
>W1511685319
LFNG01000020
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
25732
25815
+
Tyr
GTA
[ENA]
¡û
>W1610095100
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331384
331467
+
Tyr
GTA
[ENA]
¡û
>W1710097895
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331384
331467
+
Tyr
GTA
[ENA]
¡û
>W1710525002
FNJE01000012
Bacteroidota
Cloacibacterium normanense [FNJE]
73249
73166
-
Tyr
GTA
[ENA]
¡û
>W1710554963
FOIX01000004
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
488049
487966
-
Tyr
GTA
[ENA]
¡û
>W1710557458
FOLA01000012
Bacteroidota
Kaistella jeonii [FOLA]
20371
20288
-
Tyr
GTA
[ENA]
¡û
>W1710565956
FORQ01000004
Bacteroidota
Kaistella treverensis treverense [FORQ]
66264
66347
+
Tyr
GTA
[ENA]
¡û
>W1710598897
FTOI01000001
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
84907
84990
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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