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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81713 (25 seq.)
>WENV180015897
FSTQ01000138
[FSTQ] metagenome; soil
11955
11872
-
Leu
CAA
[ENA]
¢þ
>WENV180028039
FTIZ01556253
[FTIZ] metagenome; soil
659
574
-
Leu
CAA
[ENA]
¢þ
>WENV180028991
FTJI01001287
[FTJI] metagenome; soil
286
203
-
Leu
CAA
[ENA]
¢þ
>WENV180034515
FTKR01001283
[FTKR] metagenome; soil
286
203
-
Leu
CAA
[ENA]
¢þ
>C08008928
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
12550838
12550923
+
Leu
CAA
[Ensembl]
¡û
>C181012497
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
14199132
14199216
+
Leu
CAA
-
¡û
>C191010025
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
10740730
10740814
+
Leu
CAA
-
¡û
>C191010078
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
14146317
14146401
+
Leu
CAA
-
¡û
>W1610048985
BBEO01004020
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
292
375
+
Leu
CAA
[ENA]
¡û
>C131010762
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
14357085
14357170
+
Leu
CAA
[Ensembl]
¡û
>W1610520395
JELX01002198
Myxococcota
Sorangium cellulosum [JELX]
609
524
-
Leu
CAA
[ENA]
¡û
>W1610520451
JELY01002631
Myxococcota
Sorangium cellulosum [JELY]
794
711
-
Leu
CAA
[ENA]
¡û
>W1610520502
JELZ01002291
Myxococcota
Sorangium cellulosum [JELZ]
800
717
-
Leu
CAA
[ENA]
¡û
>W1610520511
JEMA01000167
Myxococcota
Sorangium cellulosum [JEMA]
834
751
-
Leu
CAA
[ENA]
¡û
>W1610520577
JEMB01001546
Myxococcota
Sorangium cellulosum [JEMB]
11351
11434
+
Leu
CAA
[ENA]
¡û
>W1610520665
JEMD01001072
Myxococcota
Sorangium cellulosum [JEMD]
11298
11383
+
Leu
CAA
[ENA]
¡û
>W1610520721
JEME01000969
Myxococcota
Sorangium cellulosum [JEME]
1902
1987
+
Leu
CAA
[ENA]
¡û
>W1710045457
BBEO01004020
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
292
375
+
Leu
CAA
[ENA]
¡û
>W1710615873
JELX01002198
Myxococcota
Sorangium cellulosum [JELX]
609
524
-
Leu
CAA
[ENA]
¡û
>W1710615929
JELY01002631
Myxococcota
Sorangium cellulosum [JELY]
794
711
-
Leu
CAA
[ENA]
¡û
>W1710615980
JELZ01002291
Myxococcota
Sorangium cellulosum [JELZ]
800
717
-
Leu
CAA
[ENA]
¡û
>W1710615989
JEMA01000167
Myxococcota
Sorangium cellulosum [JEMA]
834
751
-
Leu
CAA
[ENA]
¡û
>W1710616055
JEMB01001546
Myxococcota
Sorangium cellulosum [JEMB]
11351
11434
+
Leu
CAA
[ENA]
¡û
>W1710616143
JEMD01001072
Myxococcota
Sorangium cellulosum [JEMD]
11298
11383
+
Leu
CAA
[ENA]
¡û
>W1710616199
JEME01000969
Myxococcota
Sorangium cellulosum [JEME]
1902
1987
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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