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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.82287 (33 seq.)
>W1711096469
LTHT01000270
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
2513
2428
-
Leu
CAG
[ENA]
¡û
>WENV181427975
OGCU01000519
[OGCU] metagenome; Human gut stool
13885
13970
+
Leu
CAG
[ENA]
¢þ
>WENV181458633
OGEK01000261
[OGEK] metagenome; Human gut stool
3426
3341
-
Leu
CAG
[ENA]
¢þ
>WENV181467528
OGER01008073
[OGER] metagenome; Human gut stool
2255
2170
-
Leu
CAG
[ENA]
¢þ
>WENV181470965
OGEU01036626
[OGEU] metagenome; Human gut stool
369
284
-
Leu
CAG
[ENA]
¢þ
>WENV181474018
OGFC01001135
[OGFC] metagenome; Human gut stool
14570
14655
+
Leu
CAG
[ENA]
¢þ
>WENV181557729
OGIW01000080
[OGIW] metagenome; Human gut stool
2804
2719
-
Leu
CAG
[ENA]
¢þ
>WENV181560469
OGJC01000273
[OGJC] metagenome; Human gut stool
56994
57079
+
Leu
CAG
[ENA]
¢þ
>WENV181561426
OGJD01002343
[OGJD] metagenome; Human gut stool
2440
2355
-
Leu
CAG
[ENA]
¢þ
>WENV181579875
OGJZ01001788
[OGJZ] metagenome; Human gut stool
3350
3265
-
Leu
CAG
[ENA]
¢þ
>WENV181627743
OGMN01004569
[OGMN] metagenome; Human gut stool
2567
2652
+
Leu
CAG
[ENA]
¢þ
>WENV181634609
OGMW01007268
[OGMW] metagenome; Human gut stool
58
143
+
Leu
CAG
[ENA]
¢þ
>WENV181947790
OGZD01038722
[OGZD] human gut metagenome; faeces
320
235
-
Leu
CAG
[ENA]
¢þ
>WENV181948074
OGZE01000342
[OGZE] human gut metagenome; faeces
2275
2190
-
Leu
CAG
[ENA]
¢þ
>WENV181965280
OGZT01000083
[OGZT] human gut metagenome; faeces
66454
66539
+
Leu
CAG
[ENA]
¢þ
>WENV181970837
OGZY01000116
[OGZY] human gut metagenome; faeces
15822
15907
+
Leu
CAG
[ENA]
¢þ
>WENV182866369
OKRR01000090
[OKRR] human gut metagenome; faeces
2742
2657
-
Leu
CAG
[ENA]
¢þ
>WENV183290234
OLSH01000042
[OLSH] human gut metagenome; faeces
134286
134371
+
Leu
CAG
[ENA]
¢þ
>WENV183760803
PPYE01238631
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2537
2622
+
Leu
CAG
[ENA]
¢þ
>WENV183764000
PPYE01311679
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
14591
14676
+
Leu
CAG
[ENA]
¢þ
>WENV183780449
PPYF01171728
[PPYF] human gut metagenome; stool from patient with Crohn's disease
53724
53809
+
Leu
CAG
[ENA]
¢þ
>C181003910
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1075371
1075456
+
Leu
CAG
-
¡û
>C181160995
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2122534
2122619
+
Leu
CAG
-
¡û
>C181161093
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
291165
291080
-
Leu
CAG
-
¡û
>C181216789
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
2279225
2279140
-
Leu
CAG
-
¡û
>C191210240
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2008171
2008086
-
Leu
CAG
-
¡û
>C191219298
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
2109624
2109539
-
Leu
CAG
-
¡û
>W09118766
ACDH01000013
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
71503
71588
+
Leu
CAG
[ENA]
¡û
>W09125184
ACIE01000076
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
95023
95108
+
Leu
CAG
[ENA]
¡û
>W1810791343
QRIG01000009
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
19345
19260
-
Leu
CAG
[ENA]
¡û
>W1810818379
QSDE01000003
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
165440
165525
+
Leu
CAG
[ENA]
¡û
>W1810832223
QSOW01000014
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
58268
58353
+
Leu
CAG
[ENA]
¡û
>W121021729
AGWJ01000009
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
176900
176815
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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