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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8292 (21 seq.)
>C171085151
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
1104863
1104956
+
Ser
GCT
-
¡û
>W131050688
AMXA01000001
Betaproteobacteria
Thauera sp. 28 [AMXA]
164259
164352
+
Ser
GCT
[ENA]
¡û
>W131050744
AMXB01000002
Betaproteobacteria
Thauera sp. 27 [AMXB]
116551
116458
-
Ser
GCT
[ENA]
¡û
>W131050887
AMXD01000104
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
6826
6733
-
Ser
GCT
[ENA]
¡û
>W131050995
AMXF01000193
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
3601
3694
+
Ser
GCT
[ENA]
¡û
>C001310
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
3423134
3423041
-
Ser
GCT
[Ensembl]
¡û
>W08008019
ABKT01000037
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
8230
8323
+
Ser
GCT
[ENA]
¡û
>WENV170560982
CZCA01001741
[CZCA] anaerobic digester metagenome; anaerobic digester
957
1050
+
Ser
GCT
[ENA]
¢þ
>WENV170652657
JRYH01011950
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2755
2848
+
Ser
GCT
[ENA]
¢þ
>WENV170653226
JRYI01024372
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
4207
4114
-
Ser
GCT
[ENA]
¢þ
>WENV170654611
JRYL01002067
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
3085
3178
+
Ser
GCT
[ENA]
¢þ
>WENV170658419
JTFP01109146
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
8
101
+
Ser
GCT
[ENA]
¢þ
>C181081440
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
882063
882156
+
Ser
GCT
-
¡û
>C191022907
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
4178308
4178215
-
Ser
GCT
-
¡û
>C10113179
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2055122
2055215
+
Ser
GCT
[Ensembl]
¡û
>W1511398310
JTDM01000020
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
684629
684722
+
Ser
GCT
[ENA]
¡û
>W11185878
CACR01001311
Betaproteobacteria
Thauera selenatis AX [CACR]
3578
3671
+
Ser
GCT
[ENA]
¡û
>C161095098
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
3499992
3499899
-
Ser
GCT
-
¡û
>W1610042912
BAZL01000245
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
2169
2262
+
Ser
GCT
[ENA]
¡û
>W1710040072
BAZL01000245
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
2169
2262
+
Ser
GCT
[ENA]
¡û
>W1710539458
FNVJ01000009
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
56966
57059
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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