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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.82948 (112 seq.)
>W1710932004
LOHU01000072
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
118312
118397
+
Leu
CAA
[ENA]
¡û
>W1711744298
MUHR01000006
Alphaproteobacteria
Planktotalea arctica IMCC9565 [MUHR]
468561
468646
+
Leu
CAA
[ENA]
¡û
>C171092095
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1206874
1206959
+
Leu
CAA
-
¡û
>w023708
AAYC01000002
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
290771
290684
-
Leu
CAA
[ENA]
¡û
>WENV180100880
OAOT01005362
[OAOT] marine metagenome; Mesotrophic water
218
303
+
Leu
CAA
[ENA]
¢þ
>WENV180103943
OAPB01033428
[OAPB] marine metagenome; Sterile flask
283
198
-
Leu
CAA
[ENA]
¢þ
>WENV180104454
OAPC01009755
[OAPC] marine metagenome; na
694
779
+
Leu
CAA
[ENA]
¢þ
>WENV180105495
OAPD01074992
[OAPD] marine metagenome; 2010
240
155
-
Leu
CAA
[ENA]
¢þ
>WENV180358677
OBNQ01002947
[OBNQ] marine metagenome; ENVO 00002150
734
819
+
Leu
CAA
[ENA]
¢þ
>WENV180364836
OBOA01145172
[OBOA] marine metagenome; Deep Chlorophyll Maximum
91
6
-
Leu
CAA
[ENA]
¢þ
>WENV180374385
OBOJ01206695
[OBOJ] marine metagenome; seawater
306
388
+
Leu
CAA
[ENA]
¢þ
>WENV180376842
OBOM01112308
[OBOM] marine metagenome; Seawater
65
150
+
Leu
CAA
[ENA]
¢þ
>WENV180385957
OBPB01010137
[OBPB] marine metagenome; Sterile flask
482
397
-
Leu
CAA
[ENA]
¢þ
>WENV180389558
OBPJ01044429
[OBPJ] marine metagenome; seawater
304
389
+
Leu
CAA
[ENA]
¢þ
>WENV180393211
OBPQ01003558
[OBPQ] marine metagenome; polypropylene bottle
437
522
+
Leu
CAA
[ENA]
¢þ
>WENV180397492
OBPY01012876
[OBPY] marine metagenome; Mesotrophic water
368
453
+
Leu
CAA
[ENA]
¢þ
>WENV180587067
OCON01032970
[OCON] marine metagenome; seawater
206
291
+
Leu
CAA
[ENA]
¢þ
>WENV180589869
OCOS01028017
[OCOS] marine metagenome; Sterile flask
424
339
-
Leu
CAA
[ENA]
¢þ
>WENV180594717
OCPA01001946
[OCPA] marine metagenome; ENVO:00002010
959
1044
+
Leu
CAA
[ENA]
¢þ
>WENV180595349
OCPD01008347
[OCPD] marine metagenome; Mesotrophic water
139
224
+
Leu
CAA
[ENA]
¢þ
>WENV180636712
OCRF01044390
[OCRF] marine metagenome; niskin bottle
389
304
-
Leu
CAA
[ENA]
¢þ
>WENV180638815
OCRI01023961
[OCRI] marine metagenome; Sterile flask
267
182
-
Leu
CAA
[ENA]
¢þ
>WENV180688284
OCZA010078575
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
51
136
+
Leu
CAA
[ENA]
¢þ
>WENV181320792
OFKI01024490
[OFKI] marine metagenome; seawater
224
139
-
Leu
CAA
[ENA]
¢þ
>WENV181385718
OFRJ01011615
[OFRJ] marine metagenome; seawater
435
520
+
Leu
CAA
[ENA]
¢þ
>W08005816
ABIE01000014
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
44297
44382
+
Leu
CAA
[ENA]
¡û
>W08005835
ABIF01000001
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
442558
442476
-
Leu
CAA
[ENA]
¡û
>W141151415
AXBB01000001
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
832806
832891
+
Leu
CAA
[ENA]
¡û
>WENV183699400
OZSS01024562
[OZSS] metagenome; Seawater sample
482
567
+
Leu
CAA
[ENA]
¢þ
>WENV183704887
PDWI01000731
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4556
4471
-
Leu
CAA
[ENA]
¢þ
>WENV170163287
CEOM01116680
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
171
256
+
Leu
CAA
[ENA]
¢þ
>WENV170297181
CESE01117150
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
288
203
-
Leu
CAA
[ENA]
¢þ
>WENV170535425
CEWP01059889
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
120
-
Leu
CAA
[ENA]
¢þ
>WENV170605505
FUWD010496339
[FUWD] metagenome; unknown
92
7
-
Leu
CAA
[ENA]
¢þ
>WENV170608557
FUWD011005878
[FUWD] metagenome; unknown
167
82
-
Leu
CAA
[ENA]
¢þ
>WENV170646329
JQGR01000014
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
22876
22961
+
Leu
CAA
[ENA]
¢þ
>WENV170885210
MDTC01197940
[MDTC] marine metagenome; seawater
453
538
+
Leu
CAA
[ENA]
¢þ
>WENV170886538
MDTC01223147
[MDTC] marine metagenome; seawater
1991
2076
+
Leu
CAA
[ENA]
¢þ
>C181008509
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
1706430
1706345
-
Leu
CAA
-
¡û
>C181008541
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
1647998
1648083
+
Leu
CAA
-
¡û
>C181008623
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
1732545
1732460
-
Leu
CAA
-
¡û
>C181008680
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
1725555
1725470
-
Leu
CAA
-
¡û
>C181008737
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
1717941
1717856
-
Leu
CAA
-
¡û
>C181008772
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
1693889
1693974
+
Leu
CAA
-
¡û
>C181008850
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
2159256
2159171
-
Leu
CAA
-
¡û
>C181008910
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
1657510
1657425
-
Leu
CAA
-
¡û
>C181008967
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
1696380
1696295
-
Leu
CAA
-
¡û
>C181009000
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
1482011
1482096
+
Leu
CAA
-
¡û
>C181009081
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
1734221
1734136
-
Leu
CAA
-
¡û
>C181009138
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
1713759
1713674
-
Leu
CAA
-
¡û
>C181009172
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
1780744
1780829
+
Leu
CAA
-
¡û
>C181009253
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
1635983
1635898
-
Leu
CAA
-
¡û
>C181009310
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
1657510
1657425
-
Leu
CAA
-
¡û
>C181009367
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
1738435
1738350
-
Leu
CAA
-
¡û
>C181009401
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
1674982
1675067
+
Leu
CAA
-
¡û
>C181009483
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
1648793
1648708
-
Leu
CAA
-
¡û
>C181009540
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
1770172
1770087
-
Leu
CAA
-
¡û
>C181009596
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
1758847
1758762
-
Leu
CAA
-
¡û
>C181009653
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
1764891
1764806
-
Leu
CAA
-
¡û
>C181009710
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
1758506
1758421
-
Leu
CAA
-
¡û
>C181009767
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
1732544
1732459
-
Leu
CAA
-
¡û
>C181009800
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
1647998
1648083
+
Leu
CAA
-
¡û
>C181009882
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
1622398
1622313
-
Leu
CAA
-
¡û
>C181009916
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
1745326
1745411
+
Leu
CAA
-
¡û
>C181009997
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
1657510
1657425
-
Leu
CAA
-
¡û
>C181048976
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
1736561
1736646
+
Leu
CAA
-
¡û
>C181049033
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
1736561
1736646
+
Leu
CAA
-
¡û
>C191020022
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
2089564
2089649
+
Leu
CAA
-
¡û
>C191083167
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
1696146
1696061
-
Leu
CAA
-
¡û
>C191083223
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
1782407
1782322
-
Leu
CAA
-
¡û
>C191083281
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
848179
848094
-
Leu
CAA
-
¡û
>W09111663
ABXE01000015
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
164185
164270
+
Leu
CAA
[ENA]
¡û
>WENV025284
AACY020875464
Marine microbial communities from Global Ocean Sampling (GOS)
539
452
-
Leu
CAA
[ENA]
>W1910285064
FREU01000003
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-30 [FREU]
504873
504788
-
Leu
CAA
[ENA]
¡û
>W1910443259
FWFX01000014
Alphaproteobacteria
Roseovarius albus CECT 7450 [FWFX]
82491
82406
-
Leu
CAA
[ENA]
¡û
>W1910468978
FWXB01000004
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
143555
143470
-
Leu
CAA
[ENA]
¡û
>C141011179
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
1748918
1749003
+
Leu
CAA
[Ensembl]
¡û
>W1910499017
FXXP01000002
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
120503
120588
+
Leu
CAA
[ENA]
¡û
>W1911539268
OMPR01000009
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
101768
101853
+
Leu
CAA
[ENA]
¡û
>W1911539919
ONZJ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium EL129 [ONZJ]
1374342
1374427
+
Leu
CAA
[ENA]
¡û
>W1911813287
QZEX01000002
Alphaproteobacteria
Chachezhania antarctica SM1703 [QZEX]
33061
32976
-
Leu
CAA
[ENA]
¡û
>W1810365523
PVUF01000005
Alphaproteobacteria
Tritonibacter scottomollicae DSM 25328 [PVUF]
159839
159924
+
Leu
CAA
[ENA]
¡û
>W1810578003
QEOS01000001
Alphaproteobacteria
Phaeobacter sp. JL2872 JL2872 [QEOS]
598292
598207
-
Leu
CAA
[ENA]
¡û
>W1810670795
QJSD01000004
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
68461
68546
+
Leu
CAA
[ENA]
¡û
>W1810685715
QKZM01000045
Alphaproteobacteria
Planktotalea frisia DSM 23709 [QKZM]
6758
6843
+
Leu
CAA
[ENA]
¡û
>W1810724969
QOCE01000003
Alphaproteobacteria
Phaeobacter gallaeciensis C3M10 [QOCE]
50422
50337
-
Leu
CAA
[ENA]
¡û
>WENV030777
AACY021310922
Marine microbial communities from Global Ocean Sampling (GOS)
640
725
+
Leu
CAA
[ENA]
>W1510000325
AQQZ01000007
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
90014
90099
+
Leu
CAA
[ENA]
¡û
>WENV000344
AACY020010280
Marine microbial communities from Global Ocean Sampling (GOS)
296
211
-
Leu
CAA
[ENA]
>W1511388750
JSWJ01000003
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
498691
498606
-
Leu
CAA
[ENA]
¡û
>W1511388796
JSWK01000001
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
352120
352035
-
Leu
CAA
[ENA]
¡û
>W1511483014
JWLL01000006
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
778443
778358
-
Leu
CAA
[ENA]
¡û
>W1511518772
JXYH01000002
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
152428
152343
-
Leu
CAA
[ENA]
¡û
>C121003812
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
1782345
1782260
-
Leu
CAA
[Ensembl]
¡û
>C121003870
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
1696151
1696066
-
Leu
CAA
-
¡û
>C161083451
CP015124
Alphaproteobacteria
Phaeobacter gallaeciensis JL2886 [CP015124]
58630
58715
+
Leu
CAA
-
¡û
>WENV056919
AACY023273542
Marine microbial communities from Global Ocean Sampling (GOS)
269
184
-
Leu
CAA
[ENA]
>W1610016139
AOQA01000005
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
344546
344631
+
Leu
CAA
[ENA]
¡û
>W1610092762
CYSB01000025
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSB]
201684
201769
+
Leu
CAA
[ENA]
¡û
>W1610092799
CYSC01000007
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSC]
201880
201965
+
Leu
CAA
[ENA]
¡û
>W1610092946
CYSF01000005
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [CYSF]
50712
50797
+
Leu
CAA
[ENA]
¡û
>W1610094586
CYTW01000001
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
2059953
2059868
-
Leu
CAA
[ENA]
¡û
>W1610789473
LOHU01000072
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
118312
118397
+
Leu
CAA
[ENA]
¡û
>W1710013030
AOQA01000005
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
344546
344631
+
Leu
CAA
[ENA]
¡û
>W1710015371
AQQP01000015
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
18846
18761
-
Leu
CAA
[ENA]
¡û
>W1710096017
CYSB01000025
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSB]
201684
201769
+
Leu
CAA
[ENA]
¡û
>W1710096054
CYSC01000007
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSC]
201880
201965
+
Leu
CAA
[ENA]
¡û
>W1710096201
CYSF01000005
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [CYSF]
50712
50797
+
Leu
CAA
[ENA]
¡û
>W1710568487
FOTQ01000005
Alphaproteobacteria
Shimia aestuarii [FOTQ]
135782
135697
-
Leu
CAA
[ENA]
¡û
>W1710571040
FOVP01000001
Alphaproteobacteria
Roseovarius lutimaris [FOVP]
186318
186403
+
Leu
CAA
[ENA]
¡û
>W1710574564
FOYI01000006
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
160258
160343
+
Leu
CAA
[ENA]
¡û
>W1710598330
FTNX01000013
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [FTNX]
50248
50333
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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