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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.82965 (16 seq.)
>W1710860658
LMDB01000007
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
97422
97507
+
Tyr
GTA
[ENA]
¡û
>W1710864617
LMFZ01000050
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
690
605
-
Tyr
GTA
[ENA]
¡û
>W1710867213
LMIC01000003
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
233892
233977
+
Tyr
GTA
[ENA]
¡û
>W131225116
AUDI01000002
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
840
755
-
Tyr
GTA
[ENA]
¡û
>W131224269
AUCQ01000039
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
35845
35930
+
Tyr
GTA
[ENA]
¡û
>WENV180103508
OAPA01058243
[OAPA] marine metagenome; ENVO:00002010
238
153
-
Tyr
GTA
[ENA]
¢þ
>C181163945
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
6145672
6145587
-
Tyr
GTA
-
¡û
>C181187742
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
5206923
5207008
+
Tyr
GTA
-
¡û
>C191150811
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
6539951
6539866
-
Tyr
GTA
-
¡û
>C191157303
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
4138432
4138517
+
Tyr
GTA
-
¡û
>C191173967
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
5333652
5333737
+
Tyr
GTA
-
¡û
>C151092628
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
4147547
4147462
-
Tyr
GTA
-
¡û
>W1610723004
LMDB01000007
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
97422
97507
+
Tyr
GTA
[ENA]
¡û
>W1610726963
LMFZ01000050
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
690
605
-
Tyr
GTA
[ENA]
¡û
>W1610729559
LMIC01000003
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
233892
233977
+
Tyr
GTA
[ENA]
¡û
>W1710561499
FOOF01000003
Betaproteobacteria
Duganella sp. CF458 [FOOF]
142498
142413
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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