This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83316 (85 seq.)
>W1710866920
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
521109
521024
-
Leu
GAG
[ENA]
¡û
>W1710868443
LMJB01000009
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
23997
24082
+
Leu
GAG
[ENA]
¡û
>W1710868893
LMJL01000011
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
151692
151607
-
Leu
GAG
[ENA]
¡û
>W1711088310
LSYT01000012
Bacteroidota
Flavobacterium chilense [LSYT]
115889
115804
-
Leu
GAG
[ENA]
¡û
>W1711088312
LSYT01000012
Bacteroidota
Flavobacterium chilense [LSYT]
115545
115462
-
Leu
GAG
[ENA]
¡û
>W1711139001
LVEO01000030
Bacteroidota
Flavobacterium glycines [LVEO]
83999
84084
+
Leu
GAG
[ENA]
¡û
>W131229146
AUGO01000002
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
448576
448493
-
Leu
GAG
[ENA]
¡û
>W1711413506
MGWH01000001
Bacteroidota
Flavobacteria bacterium GWA2_35_26 [MGWH]
11805
11890
+
Leu
GAG
[ENA]
¡û
>W1711413575
MGWI01000026
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
18456
18371
-
Leu
GAG
[ENA]
¡û
>W1711431902
MIKE01000024
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
28545
28628
+
Leu
GAG
[ENA]
¡û
>W1711743988
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
620495
620410
-
Leu
GAG
[ENA]
¡û
>C171053213
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
2762539
2762454
-
Leu
GAG
-
¡û
>C171067617
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
185889
185972
+
Leu
GAG
-
¡û
>W131052344
AMYW01000039
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
27972
28057
+
Leu
GAG
[ENA]
¡û
>W131225241
AUDK01000004
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
239622
239539
-
Leu
GAG
[ENA]
¡û
>W131225285
AUDL01000008
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
27868
27953
+
Leu
GAG
[ENA]
¡û
>W131229127
AUGN01000014
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
30338
30255
-
Leu
GAG
[ENA]
¡û
>C009388
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
59415
59497
+
Leu
GAG
[Ensembl]
¡û
>WENV180284217
OBID01021336
[OBID] metagenome; sludge
178
95
-
Leu
GAG
[ENA]
¢þ
>WENV181379823
OFRD01010799
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1570
1487
-
Leu
GAG
[ENA]
¢þ
>WENV181385043
OFRI01028550
[OFRI] wastewater metagenome; Exp Tend VB 90WW
443
526
+
Leu
GAG
[ENA]
¢þ
>WENV181843976
OGVV01001921
[OGVV] freshwater metagenome; freshwater
2214
2131
-
Leu
GAG
[ENA]
¢þ
>WENV181856700
OGWN01010921
[OGWN] freshwater metagenome; freshwater
497
414
-
Leu
GAG
[ENA]
¢þ
>W141291524
JASY01000022
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
44387
44302
-
Leu
GAG
[ENA]
¡û
>WENV183726640
PJTO01000045
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
179585
179502
-
Leu
GAG
[ENA]
¢þ
>WENV183729610
PJTQ01089656
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
121
204
+
Leu
GAG
[ENA]
¢þ
>WENV183729915
PJTR01000185
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
63452
63369
-
Leu
GAG
[ENA]
¢þ
>WENV183730085
PJTR01000556
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
20621
20538
-
Leu
GAG
[ENA]
¢þ
>WENV183730580
PJTS01000151
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
227
310
+
Leu
GAG
[ENA]
¢þ
>WENV183731252
PJTS01027518
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
536
453
-
Leu
GAG
[ENA]
¢þ
>WENV183731722
PJTT01000120
[PJTT] soil metagenome; Soil (2) enriched on wood chips
105083
105000
-
Leu
GAG
[ENA]
¢þ
>WENV183735888
PJUB01008407
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
234
317
+
Leu
GAG
[ENA]
¢þ
>WENV183736037
PJUC01000004
[PJUC] soil metagenome; Soil enriched on filter paper
29322
29405
+
Leu
GAG
[ENA]
¢þ
>C181176602
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
53632
53715
+
Leu
GAG
-
¡û
>C191025452
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
4424523
4424606
+
Leu
GAG
-
¡û
>W09105462
AAPM01000005
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
30504
30587
+
Leu
GAG
[ENA]
¡û
>W141702907
JMLU01000026
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
24862
24947
+
Leu
GAG
[ENA]
¡û
>W1910183321
BJNP01000084
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
225
308
+
Leu
GAG
[ENA]
¡û
>W1910577923
JUIV01000013
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
116974
116891
-
Leu
GAG
[ENA]
¡û
>W1910792796
MRCM01000024
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
29862
29945
+
Leu
GAG
[ENA]
¡û
>W1910809084
MUGW01000005
Bacteroidota
Flavobacterium hercynium DSM 18292 [MUGW]
30363
30448
+
Leu
GAG
[ENA]
¡û
>W1910809257
MUGZ01000005
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
511161
511078
-
Leu
GAG
[ENA]
¡û
>W1910809313
MUHA01000012
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
123352
123269
-
Leu
GAG
[ENA]
¡û
>W1910809315
MUHA01000012
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
123007
122924
-
Leu
GAG
[ENA]
¡û
>W1910809447
MUHD01000013
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
28051
28134
+
Leu
GAG
[ENA]
¡û
>W1910809449
MUHD01000013
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
32246
32329
+
Leu
GAG
[ENA]
¡û
>W1910809620
MUHG01000030
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
28289
28372
+
Leu
GAG
[ENA]
¡û
>W1910809629
MUHH01000009
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
28134
28217
+
Leu
GAG
[ENA]
¡û
>W1911180838
NQOT01000604
Bacteroidota
Flavobacterium sp. IR1 [NQOT]
29889
29974
+
Leu
GAG
[ENA]
¡û
>W1911218533
NRQU01000015
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
258
341
+
Leu
GAG
[ENA]
¡û
>W1911218561
NRQU01000079
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
18677
18760
+
Leu
GAG
[ENA]
¡û
>W1911218613
NRQV01000036
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
273
356
+
Leu
GAG
[ENA]
¡û
>W1911218618
NRQV01000044
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
249
166
-
Leu
GAG
[ENA]
¡û
>W1810072074
PEFC01000006
Bacteroidota
Flavobacterium sp. 2 [PEFC]
31898
31981
+
Leu
GAG
[ENA]
¡û
>W1810072076
PEFC01000006
Bacteroidota
Flavobacterium sp. 2 [PEFC]
36099
36182
+
Leu
GAG
[ENA]
¡û
>W1810657108
QJGZ01000037
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
418018
417935
-
Leu
GAG
[ENA]
¡û
>W1810657756
QJHK01000017
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
83951
83868
-
Leu
GAG
[ENA]
¡û
>W1810657805
QJHL01000004
Bacteroidota
Flavobacterium hydrophilum IMCC34758 [QJHL]
554370
554287
-
Leu
GAG
[ENA]
¡û
>W1810669690
QJRH01000060
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
119759
119676
-
Leu
GAG
[ENA]
¡û
>W1810669772
QJRI01000182
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
409266
409183
-
Leu
GAG
[ENA]
¡û
>W1810669801
QJRJ01000074
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
223655
223572
-
Leu
GAG
[ENA]
¡û
>W1810694852
QLMI01000001
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
143296
143213
-
Leu
GAG
[ENA]
¡û
>W1810695801
QLST01000015
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
5751
5834
+
Leu
GAG
[ENA]
¡û
>W1810787345
QRDQ01000014
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
29319
29402
+
Leu
GAG
[ENA]
¡û
>W1810885469
QUNI01000013
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
131504
131421
-
Leu
GAG
[ENA]
¡û
>W121103516
AKZQ01000024
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
76267
76182
-
Leu
GAG
[ENA]
¡û
>W1610521455
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
83962
83877
-
Leu
GAG
[ENA]
¡û
>W1610729266
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
521109
521024
-
Leu
GAG
[ENA]
¡û
>W1610730789
LMJB01000009
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
23997
24082
+
Leu
GAG
[ENA]
¡û
>W1610731239
LMJL01000011
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
151692
151607
-
Leu
GAG
[ENA]
¡û
>W1610922849
LSYT01000012
Bacteroidota
Flavobacterium chilense [LSYT]
115889
115804
-
Leu
GAG
[ENA]
¡û
>W1610922851
LSYT01000012
Bacteroidota
Flavobacterium chilense [LSYT]
115545
115462
-
Leu
GAG
[ENA]
¡û
>W1610950009
LVEO01000030
Bacteroidota
Flavobacterium glycines [LVEO]
83999
84084
+
Leu
GAG
[ENA]
¡û
>W1710507247
FMVC01000006
Bacteroidota
Flavobacterium anhuiense [FMVC]
394381
394296
-
Leu
GAG
[ENA]
¡û
>W1710519216
FNEO01000005
Bacteroidota
Flavobacterium glycines [FNEO]
83819
83904
+
Leu
GAG
[ENA]
¡û
>W1710548015
FODK01000004
Bacteroidota
Flavobacterium sp. fv08 [FODK]
5655
5740
+
Leu
GAG
[ENA]
¡û
>W1710585341
FQWH01000003
Bacteroidota
Flavobacterium johnsoniae [FQWH]
28967
29050
+
Leu
GAG
[ENA]
¡û
>W1710586065
FQWW01000005
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
5413
5498
+
Leu
GAG
[ENA]
¡û
>W1710589929
FRAO01000006
Bacteroidota
Flavobacterium johnsoniae [FRAO]
441152
441069
-
Leu
GAG
[ENA]
¡û
>W1710591498
FRBT01000004
Bacteroidota
Flavobacterium chilense [FRBT]
30197
30282
+
Leu
GAG
[ENA]
¡û
>W1710591500
FRBT01000004
Bacteroidota
Flavobacterium chilense [FRBT]
30541
30624
+
Leu
GAG
[ENA]
¡û
>W1710591745
FRBY01000005
Bacteroidota
Flavobacterium saccharophilum [FRBY]
28553
28636
+
Leu
GAG
[ENA]
¡û
>W1710591960
FRCC01000006
Bacteroidota
Flavobacterium flevense [FRCC]
4653
4570
-
Leu
GAG
[ENA]
¡û
>W1710593824
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
106046
106131
+
Leu
GAG
[ENA]
¡û
>W1710620403
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
83962
83877
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK