This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83323 (19 seq.)
>W1711229622
LXYP01000022
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
49287
49202
-
Tyr
GTA
[ENA]
¡û
>WENV182541525
OJAU01000006
[OJAU] seawater metagenome; Sea water
256000
255915
-
Tyr
GTA
[ENA]
¢þ
>WENV182546174
OJBO01001786
[OJBO] seawater metagenome; Sea water
991
1076
+
Tyr
GTA
[ENA]
¢þ
>WENV182557725
OJDK01003857
[OJDK] seawater metagenome; Sea water
1552
1637
+
Tyr
GTA
[ENA]
¢þ
>WENV182558893
OJDN01011592
[OJDN] seawater metagenome; Sea water
1296
1211
-
Tyr
GTA
[ENA]
¢þ
>WENV182563879
OJED01001260
[OJED] seawater metagenome; Sea water
761
846
+
Tyr
GTA
[ENA]
¢þ
>WENV182588198
OJHO01022281
[OJHO] seawater metagenome; Sea water
264
179
-
Tyr
GTA
[ENA]
¢þ
>WENV170668396
LADL02003494
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4889
4974
+
Tyr
GTA
[ENA]
¢þ
>C181062156
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1687743
1687658
-
Tyr
GTA
-
¡û
>C181068284
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
470968
470883
-
Tyr
GTA
-
¡û
>C181220319
LT702999
Alphaproteobacteria
Erythrobacter sp. Alg231-14 [LT702999, LT703000]
3023404
3023319
-
Tyr
GTA
-
¡û
>C181220356
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
2516943
2517028
+
Tyr
GTA
-
¡û
>W1911532500
OGVD01000001
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
563775
563690
-
Tyr
GTA
[ENA]
¡û
>W1810503382
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
1543296
1543211
-
Tyr
GTA
[ENA]
¡û
>C161073944
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
666620
666705
+
Tyr
GTA
[Ensembl]
¡û
>W1611013492
LXYP01000022
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
49287
49202
-
Tyr
GTA
[ENA]
¡û
>WENV077984
AAFY01001771
Fossil microbial community from Whale Fall (Santa Cruz Basin)
326
239
-
Tyr
GTA
[ENA]
>WENV078413
AAGA01009432
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
26
113
+
Tyr
GTA
[ENA]
>W1710593894
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
929921
930006
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK