This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83326 (78 seq.)
>A171000746
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2591344
2591262
-
Ser
GCT
-
¡û
>A171001288
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
414469
414554
+
Ser
GCT
-
¡û
>A171002483
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
57936
57851
-
Ser
GCT
-
¡û
>A171003100
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2482417
2482502
+
Ser
GCT
-
¡û
>A171003495
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1754534
1754449
-
Ser
GCT
-
¡û
>A171004138
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1677068
1677153
+
Ser
GCT
-
¡û
>A171006915
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2337544
2337629
+
Ser
GCT
-
¡û
>A171007022
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
614034
613949
-
Ser
GCT
-
¡û
>A171007246
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2297059
2296977
-
Ser
GCT
-
¡û
>WENV180318179
OBKM01000039
[OBKM] metagenome; water
15978
16060
+
Ser
GCT
[ENA]
¢þ
>WENV180318334
OBKM01000429
[OBKM] metagenome; water
19292
19207
-
Ser
GCT
[ENA]
¢þ
>WENV180318453
OBKM01000948
[OBKM] metagenome; water
9670
9586
-
Ser
GCT
[ENA]
¢þ
>WENV180318706
OBKM01005665
[OBKM] metagenome; water
2609
2524
-
Ser
GCT
[ENA]
¢þ
>WENV180318823
OBKM01014033
[OBKM] metagenome; water
85
1
-
Ser
GCT
[ENA]
¢þ
>WENV170008750
APHM01004230
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
895
813
-
Ser
GCT
[ENA]
¢þ
>WENV170008838
APHM01009521
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1733
1817
+
Ser
GCT
[ENA]
¢þ
>WENV170009251
APHM01021900
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
6874
6958
+
Ser
GCT
[ENA]
¢þ
>WENV170679536
LFCJ01000015
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
72120
72202
+
Ser
GCT
[ENA]
¢þ
>WENV170679751
LFCJ01000262
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
23430
23512
+
Ser
GCT
[ENA]
¢þ
>WENV170679980
LFCJ01002132
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
12862
12947
+
Ser
GCT
[ENA]
¢þ
>WENV170680191
LFCJ01005572
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2625
2540
-
Ser
GCT
[ENA]
¢þ
>WENV170680206
LFCJ01005908
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3325
3240
-
Ser
GCT
[ENA]
¢þ
>WENV170680548
LFCJ01014596
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1748
1664
-
Ser
GCT
[ENA]
¢þ
>WENV170681086
LFFM01000039
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
51065
50980
-
Ser
GCT
[ENA]
¢þ
>WENV170681117
LFFM01000074
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
14554
14639
+
Ser
GCT
[ENA]
¢þ
>WENV170681138
LFFM01000108
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
38585
38670
+
Ser
GCT
[ENA]
¢þ
>WENV170681846
LFFM01003454
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7887
7802
-
Ser
GCT
[ENA]
¢þ
>WENV170702222
LKMJ01000912
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
22826
22742
-
Ser
GCT
[ENA]
¢þ
>WENV170702247
LKMJ01001052
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6994
7076
+
Ser
GCT
[ENA]
¢þ
>WENV170702401
LKMJ01001739
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8709
8794
+
Ser
GCT
[ENA]
¢þ
>WENV170702962
LKMJ01005108
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7697
7615
-
Ser
GCT
[ENA]
¢þ
>WENV170703051
LKMJ01005898
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8972
9057
+
Ser
GCT
[ENA]
¢þ
>WENV170703203
LKMJ01007972
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6236
6151
-
Ser
GCT
[ENA]
¢þ
>WENV170703208
LKMJ01008014
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1347
1432
+
Ser
GCT
[ENA]
¢þ
>WENV170703387
LKMJ01010632
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5416
5501
+
Ser
GCT
[ENA]
¢þ
>WENV170703583
LKMJ01014033
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3940
4025
+
Ser
GCT
[ENA]
¢þ
>WENV170703681
LKMJ01015379
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
602
687
+
Ser
GCT
[ENA]
¢þ
>WENV170703718
LKMJ01015990
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2656
2572
-
Ser
GCT
[ENA]
¢þ
>WENV170704066
LKMJ01021792
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1000
1082
+
Ser
GCT
[ENA]
¢þ
>W1910226861
FNFC01000003
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
209578
209494
-
Ser
GCT
[ENA]
¡û
>W1910227143
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
735088
735003
-
Ser
GCT
[ENA]
¡û
>W1910229926
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
620044
619959
-
Ser
GCT
[ENA]
¡û
>W1910230253
FOKW01000009
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
111239
111324
+
Ser
GCT
[ENA]
¡û
>W1910230444
FORO01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
78694
78779
+
Ser
GCT
[ENA]
¡û
>W1910230832
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1286037
1285952
-
Ser
GCT
[ENA]
¡û
>W1910572564
JMIP02000015
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
201573
201658
+
Ser
GCT
[ENA]
¡û
>W1910575874
JROF01000009
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
70795
70880
+
Ser
GCT
[ENA]
¡û
>W1910657546
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
189239
189324
+
Ser
GCT
[ENA]
¡û
>W1910826093
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
226577
226662
+
Ser
GCT
[ENA]
¡û
>W1911493143
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
819149
819067
-
Ser
GCT
[ENA]
¡û
>W1911591344
PKKI01000046
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
27363
27448
+
Ser
GCT
[ENA]
¡û
>W1911709957
QPND01000001
Euryarchaeota
Saliphagus sp. LR7 [QPND]
284034
284119
+
Ser
GCT
[ENA]
¡û
>W1610000866
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
201473
201391
-
Ser
GCT
[ENA]
¡û
>W1610001057
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
334949
334864
-
Ser
GCT
[ENA]
¡û
>W1610003270
AFNT02000021
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
42881
42963
+
Ser
GCT
[ENA]
¡û
>W1610003634
AGCY01000166
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
1733
1817
+
Ser
GCT
[ENA]
¡û
>W1610003654
AGCY01000534
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
6874
6958
+
Ser
GCT
[ENA]
¡û
>W1610004057
AGFZ01000068
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
1756
1841
+
Ser
GCT
[ENA]
¡û
>W1610004108
AGIM01000012
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
73895
73980
+
Ser
GCT
[ENA]
¡û
>W1610011707
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
20315
20400
+
Ser
GCT
[ENA]
¡û
>W1610012087
AOIA01000122
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
5293
5208
-
Ser
GCT
[ENA]
¡û
>W1610012139
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
49195
49110
-
Ser
GCT
[ENA]
¡û
>W1610012174
AOIC01000078
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
16504
16589
+
Ser
GCT
[ENA]
¡û
>W1610012416
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
115280
115365
+
Ser
GCT
[ENA]
¡û
>W1610012457
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
114391
114476
+
Ser
GCT
[ENA]
¡û
>W1610012522
AOIN01000065
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
21939
21854
-
Ser
GCT
[ENA]
¡û
>W1610012549
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
23969
23884
-
Ser
GCT
[ENA]
¡û
>W1610012608
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
337592
337677
+
Ser
GCT
[ENA]
¡û
>W1610014441
AOLZ01000076
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
79310
79395
+
Ser
GCT
[ENA]
¡û
>W1610046868
BBCV01000070
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
8896
8811
-
Ser
GCT
[ENA]
¡û
>W1610082961
CBMA010000005
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
17857
17942
+
Ser
GCT
[ENA]
¡û
>W1610083030
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
205215
205130
-
Ser
GCT
[ENA]
¡û
>W1610671382
LKCV01000133
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
174
259
+
Ser
GCT
[ENA]
¡û
>W1610682142
LKMK01000125
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
2625
2540
-
Ser
GCT
[ENA]
¡û
>W1610682300
LKMR01000099
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
602
687
+
Ser
GCT
[ENA]
¡û
>W1610682557
LKND01000003
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
51065
50980
-
Ser
GCT
[ENA]
¡û
>W1610682629
LKNF01000091
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
7887
7802
-
Ser
GCT
[ENA]
¡û
>W1610682641
LKNG01000001
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
38585
38670
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK