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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83353 (62 seq.)
>W1710806126
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
2459440
2459525
+
Tyr
GTA
[ENA]
¡û
>W1711411768
MGTN01000074
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
15797
15882
+
Tyr
GTA
[ENA]
¡û
>W1711581834
MNUQ01000025
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CG1_02_65_16 [MNUQ]
3773
3688
-
Tyr
GTA
[ENA]
¡û
>W131182255
ARQF01000020
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
432425
432510
+
Tyr
GTA
[ENA]
¡û
>W131182285
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
847567
847652
+
Tyr
GTA
[ENA]
¡û
>W131182288
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
848092
848177
+
Tyr
GTA
[ENA]
¡û
>W131182289
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
889012
889097
+
Tyr
GTA
[ENA]
¡û
>W131182290
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
890142
890227
+
Tyr
GTA
[ENA]
¡û
>W131235984
AULY01000009
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
432655
432570
-
Tyr
GTA
[ENA]
¡û
>W131235987
AULY01000009
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
432151
432066
-
Tyr
GTA
[ENA]
¡û
>W131235988
AULY01000009
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
430300
430215
-
Tyr
GTA
[ENA]
¡û
>W131235989
AULY01000009
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
429172
429087
-
Tyr
GTA
[ENA]
¡û
>W131236004
AULY01000010
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
99174
99089
-
Tyr
GTA
[ENA]
¡û
>W131099221
AOSV01000030
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
539
454
-
Tyr
GTA
[ENA]
¡û
>W131208376
ATHI01000012
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
24257
24342
+
Tyr
GTA
[ENA]
¡û
>W131208483
ATHV01000055
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
107284
107369
+
Tyr
GTA
[ENA]
¡û
>W131236069
AULZ01000021
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
76248
76333
+
Tyr
GTA
[ENA]
¡û
>w022456
AAWN01000003
Thermodesulfobacteriota
Desulfosudis oleivorans oleovorans Hxd3 [AAWN]
113
198
+
Tyr
GTA
[ENA]
¡û
>WENV180038128
FVAA012628994
[FVAA] soil metagenome; Soil
118
33
-
Tyr
GTA
[ENA]
¢þ
>WENV180044062
LQAJ01000841
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3009
3094
+
Tyr
GTA
[ENA]
¢þ
>WENV180297139
OBJA01011756
[OBJA] soil metagenome; sediment, water from around vicinity
1611
1526
-
Tyr
GTA
[ENA]
¢þ
>C08004121
CP000859
Thermodesulfobacteriota
Desulfosudis oleivorans Hxd3 [CP000859]
824166
824251
+
Tyr
GTA
[Ensembl]
¡û
>WENV183705320
PDWI01001379
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
35731
35646
-
Tyr
GTA
[ENA]
¢þ
>WENV170007906
AMWB02163819
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1772
1687
-
Tyr
GTA
[ENA]
¢þ
>WENV170419477
CEUM01129283
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12644
12729
+
Tyr
GTA
[ENA]
¢þ
>WENV170438713
CEUU01231858
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4
89
+
Tyr
GTA
[ENA]
¢þ
>WENV170439038
CEUV01009454
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6213
6128
-
Tyr
GTA
[ENA]
¢þ
>WENV170640601
JFJP01023014
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
630
545
-
Tyr
GTA
[ENA]
¢þ
>WENV170901923
MDTD01177896
[MDTD] marine metagenome; seawater
6908
6993
+
Tyr
GTA
[ENA]
¢þ
>C181226988
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4100303
4100388
+
Tyr
GTA
-
¡û
>W1911737987
QTZO01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
117838
117923
+
Tyr
GTA
[ENA]
¡û
>W10111363
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34289
34204
-
Tyr
GTA
[ENA]
¡û
>C11106865
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2476411
2476326
-
Tyr
GTA
[Ensembl]
¡û
>W11114306
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34289
34204
-
Tyr
GTA
[ENA]
¡û
>W11149145
AEUJ01000007
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
133318
133403
+
Tyr
GTA
[ENA]
¡û
>W11162679
AFHE01000001
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
251956
251871
-
Tyr
GTA
[ENA]
¡û
>C121008992
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3781462
3781547
+
Tyr
GTA
[Ensembl]
¡û
>C121009069
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
251956
251871
-
Tyr
GTA
[Ensembl]
¡û
>W1610046052
BBCB01000012
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
42863
42778
-
Tyr
GTA
[ENA]
¡û
>W1610550490
JXMS01000028
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
48598
48683
+
Tyr
GTA
[ENA]
¡û
>W1610550492
JXMS01000028
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
49036
49121
+
Tyr
GTA
[ENA]
¡û
>W1610550494
JXMS01000028
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
49513
49598
+
Tyr
GTA
[ENA]
¡û
>W1610550498
JXMS01000031
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
77125
77040
-
Tyr
GTA
[ENA]
¡û
>W1610550499
JXMS01000031
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
75923
75838
-
Tyr
GTA
[ENA]
¡û
>W1710042848
BBCB01000012
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
42863
42778
-
Tyr
GTA
[ENA]
¡û
>W1710588820
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
847285
847370
+
Tyr
GTA
[ENA]
¡û
>W1710588823
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
847810
847895
+
Tyr
GTA
[ENA]
¡û
>W1710588824
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
888730
888815
+
Tyr
GTA
[ENA]
¡û
>W1710588825
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
889860
889945
+
Tyr
GTA
[ENA]
¡û
>W1710588858
FQZR01000003
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
286191
286106
-
Tyr
GTA
[ENA]
¡û
>W1710594486
FSRG01000005
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
376555
376470
-
Tyr
GTA
[ENA]
¡û
>W1710594511
FSRG01000009
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
60935
60850
-
Tyr
GTA
[ENA]
¡û
>W1710594513
FSRG01000009
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
60436
60351
-
Tyr
GTA
[ENA]
¡û
>W1710594514
FSRG01000009
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
57418
57333
-
Tyr
GTA
[ENA]
¡û
>W1710594515
FSRG01000009
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
54789
54704
-
Tyr
GTA
[ENA]
¡û
>W1710594516
FSRG01000009
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
53611
53526
-
Tyr
GTA
[ENA]
¡û
>W1710660210
JXMS01000022
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
28505
28590
+
Tyr
GTA
[ENA]
¡û
>W1710660215
JXMS01000028
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
48598
48683
+
Tyr
GTA
[ENA]
¡û
>W1710660217
JXMS01000028
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
49036
49121
+
Tyr
GTA
[ENA]
¡û
>W1710660219
JXMS01000028
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
49513
49598
+
Tyr
GTA
[ENA]
¡û
>W1710660223
JXMS01000031
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
77125
77040
-
Tyr
GTA
[ENA]
¡û
>W1710660224
JXMS01000031
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
75923
75838
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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