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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83369 (13 seq.)
>A171001214
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
1131585
1131670
+
Leu
TAA
-
¡û
>A171003827
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
2123749
2123666
-
Leu
TAA
-
¡û
>A17A000550
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
881457
881356
-
Leu
TAA
-
¡û
>A179000244
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
881457
881356
-
Leu
TAA
-
¡û
>WENV180287584
OBIK01138732
[OBIK] hydrothermal vent metagenome; sea water
126
43
-
Leu
TAA
[ENA]
¢þ
>At0646
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1960974
1960891
-
Leu
TAA
[Ensembl]
¡û
>WENV170675814
LDZQ01000600
[LDZQ] terrestrial metagenome; oil reservoir sample I2
11874
11957
+
Leu
TAA
[ENA]
¢þ
>WENV170676380
LDZR01002365
[LDZR] terrestrial metagenome; oil reservoir sample K2
24004
24087
+
Leu
TAA
[ENA]
¢þ
>WENV170779088
LZCG01000562
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
4884
4967
+
Leu
TAA
[ENA]
¢þ
>W1910200381
FJNF01000195
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
50311
50228
-
Leu
TAA
[ENA]
¡û
>W1610001578
ACYZ01000001
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
194688
194773
+
Leu
TAA
[ENA]
¡û
>W1610612341
LGEQ01000027
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
11874
11957
+
Leu
TAA
[ENA]
¡û
>W1610612598
LGEX01000007
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
24004
24087
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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