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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83413 (42 seq.)
>W131220433
ATZJ01000011
Betaproteobacteria
Chitinilyticum litopenaei DSM 21440 [ATZJ]
113479
113393
-
Leu
CAG
[ENA]
¡û
>W1711664355
MQZX01000289
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
231
317
+
Leu
CAG
[ENA]
¡û
>W1711747432
MUKR01000002
Betaproteobacteria
Chromobacterium violaceum [MUKR]
3728
3814
+
Leu
CAG
[ENA]
¡û
>W1711747518
MUKS01000002
Betaproteobacteria
Chromobacterium violaceum [MUKS]
402756
402670
-
Leu
CAG
[ENA]
¡û
>W1711747761
MUKV01000013
Betaproteobacteria
Chromobacterium haemolyticum [MUKV]
100530
100444
-
Leu
CAG
[ENA]
¡û
>W1711747808
MUKW01000003
Betaproteobacteria
Chromobacterium violaceum [MUKW]
3629
3715
+
Leu
CAG
[ENA]
¡û
>W1711747887
MUKX01000003
Betaproteobacteria
Chromobacterium violaceum [MUKX]
3629
3715
+
Leu
CAG
[ENA]
¡û
>W1712081950
NHOO01000005
Betaproteobacteria
Chromobacterium violaceum [NHOO]
305194
305108
-
Leu
CAG
[ENA]
¡û
>C007320
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
3829094
3829180
+
Leu
CAG
[Ensembl]
¡û
>WENV180255304
OBEQ010712488
[OBEQ] groundwater metagenome; groundwater
4494
4580
+
Leu
CAG
[ENA]
¢þ
>WENV180282573
OBIC01000210
[OBIC] beach sand metagenome; beach sand
12788
12874
+
Leu
CAG
[ENA]
¢þ
>W141106174
AVPH01000293
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
26484
26398
-
Leu
CAG
[ENA]
¡û
>WENV181415738
OGCL01022289
[OGCL] hot springs metagenome; Hot spring water
874
960
+
Leu
CAG
[ENA]
¢þ
>C181062418
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
4773144
4773230
+
Leu
CAG
-
¡û
>C181093208
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
3524300
3524386
+
Leu
CAG
-
¡û
>C181117158
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
830098
830012
-
Leu
CAG
-
¡û
>C181179605
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
522259
522345
+
Leu
CAG
-
¡û
>C181180279
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
1666631
1666717
+
Leu
CAG
-
¡û
>W141778969
JONK01000035
Betaproteobacteria
Chromobacterium haemolyticum DSM 19808 [JONK]
2497
2583
+
Leu
CAG
[ENA]
¡û
>W141779056
JONM01000008
Betaproteobacteria
Andreprevotia chitinilytica DSM 18519 [JONM]
136555
136469
-
Leu
CAG
[ENA]
¡û
>W141779057
JONM01000008
Betaproteobacteria
Andreprevotia chitinilytica DSM 18519 [JONM]
136424
136338
-
Leu
CAG
[ENA]
¡û
>W1910803538
MTBD01000030
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
3535
3621
+
Leu
CAG
[ENA]
¡û
>W1810266848
PQWB01000024
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
3393
3479
+
Leu
CAG
[ENA]
¡û
>W1511525807
JYGI01000007
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
175898
175812
-
Leu
CAG
[ENA]
¡û
>W1511544124
JZJJ01000008
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
132473
132387
-
Leu
CAG
[ENA]
¡û
>W1511544303
JZJL01000043
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
3419
3505
+
Leu
CAG
[ENA]
¡û
>W1511640901
LDUM01000023
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
62191
62105
-
Leu
CAG
[ENA]
¡û
>W1511641404
LDUT01000007
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
175852
175766
-
Leu
CAG
[ENA]
¡û
>W1511641527
LDUU01000012
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
402311
402225
-
Leu
CAG
[ENA]
¡û
>W1511641809
LDUX01000024
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
2538
2624
+
Leu
CAG
[ENA]
¡û
>W1610049641
BBFD01000167
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
2051
1965
-
Leu
CAG
[ENA]
¡û
>W1610049648
BBFD01000379
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
2956
3042
+
Leu
CAG
[ENA]
¡û
>W1610576318
LAQT01000002
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
402632
402546
-
Leu
CAG
[ENA]
¡û
>W1610576319
LAQT01000002
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
386327
386241
-
Leu
CAG
[ENA]
¡û
>W1710046040
BBFD01000167
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
2051
1965
-
Leu
CAG
[ENA]
¡û
>W1710046047
BBFD01000379
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
2956
3042
+
Leu
CAG
[ENA]
¡û
>W1710570487
FOVE01000007
Betaproteobacteria
Formivibrio citricus [FOVE]
65741
65827
+
Leu
CAG
[ENA]
¡û
>W1710570488
FOVE01000007
Betaproteobacteria
Formivibrio citricus [FOVE]
65853
65939
+
Leu
CAG
[ENA]
¡û
>W1710605587
FWXD01000011
Betaproteobacteria
Andreprevotia lacus DSM 23236 [FWXD]
5124
5038
-
Leu
CAG
[ENA]
¡û
>W1710605588
FWXD01000011
Betaproteobacteria
Andreprevotia lacus DSM 23236 [FWXD]
4994
4908
-
Leu
CAG
[ENA]
¡û
>W1710694807
LAQT01000002
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
402632
402546
-
Leu
CAG
[ENA]
¡û
>W1710694808
LAQT01000002
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
386327
386241
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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