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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83698 (41 seq.)
>W131159464
AQVB01000032
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
1048
963
-
Tyr
GTA
[ENA]
¡û
>W1711116061
LUAS01000019
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
589
504
-
Tyr
GTA
[ENA]
¡û
>W131169130
AREM01000037
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
23706
23791
+
Tyr
GTA
[ENA]
¡û
>W1711185182
LWNE01000112
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
589
504
-
Tyr
GTA
[ENA]
¡û
>W141194209
AYSV01000128
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
554
469
-
Tyr
GTA
[ENA]
¡û
>W141200380
AYXT01000009
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
837
752
-
Tyr
GTA
[ENA]
¡û
>WENV183710644
PDWI01050693
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2940
3025
+
Tyr
GTA
[ENA]
¢þ
>WENV170686090
LFRM01125695
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
464
379
-
Tyr
GTA
[ENA]
¢þ
>WENV170690436
LFRM01341493
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1334
1419
+
Tyr
GTA
[ENA]
¢þ
>WENV170717196
LSQX01027435
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
41380
41465
+
Tyr
GTA
[ENA]
¢þ
>WENV170720214
LSQX01145232
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2101
2186
+
Tyr
GTA
[ENA]
¢þ
>WENV170724568
LSQX01309980
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
842
927
+
Tyr
GTA
[ENA]
¢þ
>WENV170726639
LSQX01388402
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
812
727
-
Tyr
GTA
[ENA]
¢þ
>C181049087
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1658385
1658300
-
Tyr
GTA
-
¡û
>C181049952
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1642039
1641954
-
Tyr
GTA
-
¡û
>C181049989
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1731147
1731062
-
Tyr
GTA
-
¡û
>C181050026
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1627422
1627337
-
Tyr
GTA
-
¡û
>C181050108
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1684136
1684051
-
Tyr
GTA
-
¡û
>C181152582
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
2343843
2343758
-
Tyr
GTA
-
¡û
>C191208075
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1693607
1693522
-
Tyr
GTA
-
¡û
>W141560371
JHXN01000014
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
2382
2297
-
Tyr
GTA
[ENA]
¡û
>W141562696
JHZJ01000011
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
861
776
-
Tyr
GTA
[ENA]
¡û
>W1910225822
FMSW01000013
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
180429
180514
+
Tyr
GTA
[ENA]
¡û
>W1910891664
NEXS01000001
Betaproteobacteria
Advenella sp. S44 [NEXS]
302564
302479
-
Tyr
GTA
[ENA]
¡û
>W1911595545
PNGK01000011
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
42120
42035
-
Tyr
GTA
[ENA]
¡û
>W1810701950
QMFX01000001
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
182612
182527
-
Tyr
GTA
[ENA]
¡û
>C151004928
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
4685424
4685339
-
Tyr
GTA
[Ensembl]
¡û
>C151046313
CP009238
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [CP009238]
1950122
1950037
-
Tyr
GTA
[Ensembl]
¡û
>W1511350707
JRMO01000009
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
2146
2061
-
Tyr
GTA
[ENA]
¡û
>W1511351551
JRNI01000066
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
16743
16828
+
Tyr
GTA
[ENA]
¡û
>C11122626
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
641049
640964
-
Tyr
GTA
[Ensembl]
¡û
>W1511458928
JVJW01000038
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
9379
9464
+
Tyr
GTA
[ENA]
¡û
>W1511461253
JVMH01000098
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
1749
1664
-
Tyr
GTA
[ENA]
¡û
>W1511681895
LFJI01000315
Betaproteobacteria
Candidatus Burkholderia brachyanthoides brachyanthoides UZHbot7 [LFJI]
3790
3875
+
Tyr
GTA
[ENA]
¡û
>W11171224
AFQG01000238
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
4610
4695
+
Tyr
GTA
[ENA]
¡û
>C121004846
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
1630554
1630469
-
Tyr
GTA
[Ensembl]
¡û
>C121009938
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1724216
1724131
-
Tyr
GTA
[Ensembl]
¡û
>C121014509
CP003555
Betaproteobacteria
Advenella kashmirensis WT001 [CP003555]
4321065
4320980
-
Tyr
GTA
[Ensembl]
¡û
>W1610606566
LFTA01000082
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
464
379
-
Tyr
GTA
[ENA]
¡û
>W1710004102
AFWK01000013
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [AFWK]
392
307
-
Tyr
GTA
[ENA]
¡û
>W1710727853
LFTA01000082
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
464
379
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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