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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8409 (19 seq.)
>W1711167313
LVWG01000027
Chlorobiota
Pelodictyon luteolum [LVWG]
58222
58314
+
Ser
GCT
[ENA]
¡û
>C171049474
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
794779
794689
-
Ser
GCT
-
¡û
>C005324
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
570318
570229
-
Ser
GCT
[Ensembl]
¡û
>C016744
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
909256
909348
+
Ser
GCT
[Ensembl]
¡û
>C018271
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1189979
1189890
-
Ser
GCT
[Ensembl]
¡û
>C08003519
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
1592771
1592679
-
Ser
GCT
[Ensembl]
¡û
>WENV170613759
FUWD012818317
[FUWD] metagenome; unknown
911
1003
+
Ser
GCT
[ENA]
¢þ
>W09103367
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
2498
2408
-
Ser
GCT
[ENA]
¡û
>SRA1020334
SRR035083.98303
454 Sequencing (SRP001804)
114
22
-
Ser
GCT
[SRA]
>SRA1020512
SRR035083.127693
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1020836
SRR035083.171342
454 Sequencing (SRP001804)
456
364
-
Ser
GCT
[SRA]
>SRA1021244
SRR035083.227941
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021288
SRR035083.237016
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021499
SRR035083.266198
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1021954
SRR035083.331676
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1022119
SRR035083.355684
454 Sequencing (SRP001804)
428
336
-
Ser
GCT
[SRA]
>SRA1022564
SRR035083.424735
454 Sequencing (SRP001804)
173
265
+
Ser
GCT
[SRA]
>SRA1037816
SRR035090.200872
454 Sequencing (SRP001811)
150
58
-
Ser
GCT
[SRA]
>W1610977644
LVWG01000027
Chlorobiota
Pelodictyon luteolum [LVWG]
58222
58314
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK