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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84771 (19 seq.)
>W1711326835
MBGA01000025
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus [MBGA]
262307
262221
-
Leu
CAA
[ENA]
¡û
>W1711350426
MCRK01000034
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
38729
38815
+
Leu
CAA
[ENA]
¡û
>W1711350458
MCRL01000016
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
38733
38819
+
Leu
CAA
[ENA]
¡û
>W1711351823
MDCT01000001
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
261864
261778
-
Leu
CAA
[ENA]
¡û
>W1711351875
MDCU01000004
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
46076
45990
-
Leu
CAA
[ENA]
¡û
>W1711351903
MDCV01000001
Campylobacterota
Campylobacter pinnipediorum RM18906 [MDCV]
218599
218685
+
Leu
CAA
[ENA]
¡û
>W131161300
AQXN01000004
Campylobacterota
Campylobacter curvus DSM 6644 [AQXN]
54108
54022
-
Leu
CAA
[ENA]
¡û
>C171017324
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
737667
737753
+
Leu
CAA
-
¡û
>C171055142
CP017018
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M302/10/6 [CP017018]
802575
802661
+
Leu
CAA
-
¡û
>w017221
AARA02000001
Campylobacterota
Campylobacter curvus 525.92 [AARA]
876480
876397
-
Leu
CAA
[ENA]
¡û
>WENV181070056
OEAE01000188
[OEAE] human metagenome; G_DNA_Supragingival plaque
39149
39235
+
Leu
CAA
[ENA]
¢þ
>C08003161
CP000767
Campylobacterota
Campylobacter curvus 525.92 [CP000767]
876481
876398
-
Leu
CAA
[Ensembl]
¡û
>WENV182960784
OKWK01000006
[OKWK] human gut metagenome; stool
444266
444352
+
Leu
CAA
[ENA]
¢þ
>C181038871
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
680804
680718
-
Leu
CAA
-
¡û
>C181038916
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
679846
679760
-
Leu
CAA
-
¡û
>C181038961
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
690142
690056
-
Leu
CAA
-
¡û
>C181039005
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
653114
653028
-
Leu
CAA
-
¡û
>W141555944
JHQQ01000001
Campylobacterota
Campylobacter mucosalis [JHQQ]
378043
378129
+
Leu
CAA
[ENA]
¡û
>W1511205846
JMTI01000002
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
38365
38451
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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