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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8521 (92 seq.)
>W1710923725
LOBU02000015
Actinomycetota
Amycolatopsis regifaucium [LOBU]
642399
642309
-
Ser
GCT
[ENA]
¡û
>W1711004807
LQMT02000022
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
199880
199970
+
Ser
GCT
[ENA]
¡û
>W1711662741
MQUQ01000015
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
393114
393204
+
Ser
GCT
[ENA]
¡û
>W1711749215
MUMI01000147
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
4272
4362
+
Ser
GCT
[ENA]
¡û
>W1711765411
MUXN01000005
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
177559
177469
-
Ser
GCT
[ENA]
¡û
>W1711790864
MWIH01000006
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
398800
398892
+
Ser
GCT
[ENA]
¡û
>C171046306
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
9171253
9171163
-
Ser
GCT
-
¡û
>W131064594
ANMG01000001
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
159414
159504
+
Ser
GCT
[ENA]
¡û
>W131100459
AOUO01000178
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
26107
26017
-
Ser
GCT
[ENA]
¡û
>W131158738
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
5193243
5193335
+
Ser
GCT
[ENA]
¡û
>W131165081
ARBH01000007
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
284759
284849
+
Ser
GCT
[ENA]
¡û
>W131181789
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
2281755
2281665
-
Ser
GCT
[ENA]
¡û
>W131202815
ASXG01000172
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
110893
110803
-
Ser
GCT
[ENA]
¡û
>C021602
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
257748
257837
+
Ser
GCT
[Ensembl]
¡û
>WENV180343233
OBLK01000375
[OBLK] soil metagenome; Clay
3183
3273
+
Ser
GCT
[ENA]
¢þ
>WENV181165655
OEIS01083387
[OEIS] soil metagenome; soil
46
136
+
Ser
GCT
[ENA]
¢þ
>WENV181295453
OFHI01043384
[OFHI] soil metagenome; Clay
191
281
+
Ser
GCT
[ENA]
¢þ
>WENV181297883
OFHL01002424
[OFHL] soil metagenome; Clay
1446
1536
+
Ser
GCT
[ENA]
¢þ
>W141151757
AXBH01000004
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
435476
435384
-
Ser
GCT
[ENA]
¡û
>WENV181609274
OGLN01014398
[OGLN] metagenome; Human gut stool
184
94
-
Ser
GCT
[ENA]
¢þ
>WENV181634704
OGMW01012052
[OGMW] metagenome; Human gut stool
1658
1748
+
Ser
GCT
[ENA]
¢þ
>WENV181642192
OGNF01111937
[OGNF] metagenome; Human gut stool
168
78
-
Ser
GCT
[ENA]
¢þ
>W141215934
AZUM01000004
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
327629
327537
-
Ser
GCT
[ENA]
¡û
>WENV170648863
JRHI01003050
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2420
2510
+
Ser
GCT
[ENA]
¢þ
>W141451924
JFBM01000037
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
24121
24211
+
Ser
GCT
[ENA]
¡û
>C181016782
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
5957564
5957474
-
Ser
GCT
-
¡û
>C181019497
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
329850
329941
+
Ser
GCT
-
¡û
>C181028441
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
8038657
8038747
+
Ser
GCT
-
¡û
>C191157664
CP038101
Actinomycetota
Saccharomonospora xinjiangensis 31sw [CP038101]
224532
224623
+
Ser
GCT
-
¡û
>W09120756
ACEV01000091
Actinomycetota
Streptomyces sp. AA4 [ACEV]
280450
280540
+
Ser
GCT
[ENA]
¡û
>W141563884
JIAI01000005
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
223907
223997
+
Ser
GCT
[ENA]
¡û
>W141712144
JMQI01000079
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
136472
136382
-
Ser
GCT
[ENA]
¡û
>W141758786
JNYW01000062
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
1478
1568
+
Ser
GCT
[ENA]
¡û
>W141758964
JNYZ01000012
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
18889
18979
+
Ser
GCT
[ENA]
¡û
>W141773694
JOIQ01000002
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
202641
202731
+
Ser
GCT
[ENA]
¡û
>C141001859
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
291052
291142
+
Ser
GCT
[Ensembl]
¡û
>W1910657595
MASU01000002
Actinomycetota
Prauserella flavalba YIM 121212 [MASU]
201275
201366
+
Ser
GCT
[ENA]
¡û
>W1910657643
MASV01000002
Actinomycetota
Prauserella coralliicola DSM 45821 [MASV]
957235
957326
+
Ser
GCT
[ENA]
¡û
>W1910994795
NKYE01000005
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
159033
159124
+
Ser
GCT
[ENA]
¡û
>W1911071511
NMQT01000002
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
53858
53948
+
Ser
GCT
[ENA]
¡û
>W1911075162
NMUK01000015
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
52782
52872
+
Ser
GCT
[ENA]
¡û
>W1911075207
NMUL01000001
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
213359
213269
-
Ser
GCT
[ENA]
¡û
>W1911572254
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
637995
638085
+
Ser
GCT
[ENA]
¡û
>W1911676748
QHHW01000010
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
170288
170378
+
Ser
GCT
[ENA]
¡û
>W1911676805
QHHX01000002
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
105536
105626
+
Ser
GCT
[ENA]
¡û
>W1911678746
QHJJ01000004
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
256905
256815
-
Ser
GCT
[ENA]
¡û
>W1911678772
QHJK01000001
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
459110
459200
+
Ser
GCT
[ENA]
¡û
>W1911678901
QHJM01000006
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
123601
123511
-
Ser
GCT
[ENA]
¡û
>W1911679683
QHKL01000001
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
599084
598994
-
Ser
GCT
[ENA]
¡û
>W1911814680
QZFV01000021
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
6657
6747
+
Ser
GCT
[ENA]
¡û
>W1810058389
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
1957759
1957669
-
Ser
GCT
[ENA]
¡û
>W1810173305
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
2663245
2663155
-
Ser
GCT
[ENA]
¡û
>W1810173443
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
1193249
1193339
+
Ser
GCT
[ENA]
¡û
>W1810237692
PPHG01000091
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
117620
117530
-
Ser
GCT
[ENA]
¡û
>W1810254788
PQHW01000118
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
11096
11186
+
Ser
GCT
[ENA]
¡û
>W1810254840
PQHX01000099
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
12018
11928
-
Ser
GCT
[ENA]
¡û
>W1810254889
PQHY01000091
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
13895
13805
-
Ser
GCT
[ENA]
¡û
>W1810356938
PVNH01000009
Actinomycetota
Prauserella shujinwangii CGMCC 4.7125 [PVNH]
37719
37810
+
Ser
GCT
[ENA]
¡û
>W1810573633
QEKW01000006
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
150850
150760
-
Ser
GCT
[ENA]
¡û
>W1810608705
QGTN01000002
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
744546
744637
+
Ser
GCT
[ENA]
¡û
>C151018970
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
6898377
6898467
+
Ser
GCT
-
¡û
>C151040838
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
310749
310839
+
Ser
GCT
[Ensembl]
¡û
>C151044199
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
299391
299483
+
Ser
GCT
[Ensembl]
¡û
>C10112928
CP001683
Actinomycetota
Saccharomonospora viridis DSM 43017 [CP001683]
197608
197700
+
Ser
GCT
[Ensembl]
¡û
>C11100886
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
290201
290291
+
Ser
GCT
-
¡û
>W1511360252
JRZE01000003
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
926020
926112
+
Ser
GCT
[ENA]
¡û
>W1511509627
JXRD01000025
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
215362
215272
-
Ser
GCT
[ENA]
¡û
>W11152475
AEYC01000029
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
78279
78369
+
Ser
GCT
[ENA]
¡û
>W11176355
AFWY01000010
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
676379
676287
-
Ser
GCT
[ENA]
¡û
>W11181206
AGIU01000039
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
20121
20031
-
Ser
GCT
[ENA]
¡û
>C121015447
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
291053
291143
+
Ser
GCT
-
¡û
>W121036283
AHLY01000001
Actinomycetota
Saccharomonospora cyanea NA-134 [AHLY]
233769
233861
+
Ser
GCT
[ENA]
¡û
>W121045495
AICV01000012
Actinomycetota
Saccharomonospora xinjiangensis XJ-54 [AICV]
1935894
1935802
-
Ser
GCT
[ENA]
¡û
>C131003605
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
314463
314553
+
Ser
GCT
[Ensembl]
¡û
>W1610781180
LOBU01000001
Actinomycetota
Amycolatopsis regifaucium [LOBU]
400980
400890
-
Ser
GCT
[ENA]
¡û
>W1610855446
LQMT01000229
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
89305
89215
-
Ser
GCT
[ENA]
¡û
>W1710512140
FMZE01000003
Actinomycetota
Prauserella marina [FMZE]
280218
280310
+
Ser
GCT
[ENA]
¡û
>W1710529983
FNOK01000017
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
14614
14704
+
Ser
GCT
[ENA]
¡û
>W1710530171
FNON01000018
Actinomycetota
Amycolatopsis xylanica [FNON]
11671
11761
+
Ser
GCT
[ENA]
¡û
>W1710535460
FNSO01000003
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
696168
696258
+
Ser
GCT
[ENA]
¡û
>W1710536180
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
3738562
3738472
-
Ser
GCT
[ENA]
¡û
>W1710538207
FNUJ01000005
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
321894
321984
+
Ser
GCT
[ENA]
¡û
>W1710549025
FOEF01000013
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
175847
175937
+
Ser
GCT
[ENA]
¡û
>W1710556491
FOKG01000003
Actinomycetota
Amycolatopsis marina [FOKG]
244068
243978
-
Ser
GCT
[ENA]
¡û
>W1710563368
FOPQ01000001
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
172988
173078
+
Ser
GCT
[ENA]
¡û
>W1710565907
FORP01000010
Actinomycetota
Amycolatopsis sacchari [FORP]
122995
122905
-
Ser
GCT
[ENA]
¡û
>W1710569658
FOUP01000003
Actinomycetota
Saccharopolyspora antimicrobica [FOUP]
101947
101857
-
Ser
GCT
[ENA]
¡û
>W1710571655
FOWC01000001
Actinomycetota
Amycolatopsis rubida [FOWC]
627345
627255
-
Ser
GCT
[ENA]
¡û
>W1710572486
FOWS01000002
Actinomycetota
Saccharomonospora viridis [FOWS]
357754
357662
-
Ser
GCT
[ENA]
¡û
>W1710576301
FOZX01000012
Actinomycetota
Saccharopolyspora flava [FOZX]
86922
86830
-
Ser
GCT
[ENA]
¡û
>W1710628081
JPRA01000027
Actinomycetota
Amycolatopsis mediterranei [JPRA]
42633
42543
-
Ser
GCT
[ENA]
¡û
>W1710773671
LIWC01000002
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
1715000
1715090
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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