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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.85328 (85 seq.)
>W1710871528
LMLJ01000002
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
105878
105793
-
Leu
CAG
[ENA]
¡û
>W1710871545
LMLJ01000012
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
679441
679356
-
Leu
CAG
[ENA]
¡û
>W1710871546
LMLJ01000012
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
679319
679234
-
Leu
CAG
[ENA]
¡û
>WENV170707645
LNAP01028297
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2906
2821
-
Leu
CAG
[ENA]
¢þ
>C181035751
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
3027389
3027474
+
Leu
CAG
-
¡û
>C181035752
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
3027511
3027596
+
Leu
CAG
-
¡û
>C181035762
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
3864115
3864200
+
Leu
CAG
-
¡û
>C191087408
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
4327205
4327290
+
Leu
CAG
-
¡û
>C191087409
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
4327327
4327412
+
Leu
CAG
-
¡û
>C191087418
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
4776328
4776243
-
Leu
CAG
-
¡û
>C191126445
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
4157299
4157384
+
Leu
CAG
-
¡û
>C191126446
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
4157421
4157506
+
Leu
CAG
-
¡û
>C191126455
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
4660456
4660371
-
Leu
CAG
-
¡û
>C191126521
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
4157143
4157228
+
Leu
CAG
-
¡û
>C191126522
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
4157265
4157350
+
Leu
CAG
-
¡û
>C191126531
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
4660300
4660215
-
Leu
CAG
-
¡û
>C191126598
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
4284529
4284614
+
Leu
CAG
-
¡û
>C191126599
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
4284651
4284736
+
Leu
CAG
-
¡û
>C191126608
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
4735644
4735559
-
Leu
CAG
-
¡û
>C191151748
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1943251
1943336
+
Leu
CAG
-
¡û
>C191151749
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1943373
1943458
+
Leu
CAG
-
¡û
>C191151759
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
2900157
2900242
+
Leu
CAG
-
¡û
>W141710404
JMPJ01000017
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
175492
175407
-
Leu
CAG
[ENA]
¡û
>W141710405
JMPJ01000017
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
175349
175264
-
Leu
CAG
[ENA]
¡û
>W141710406
JMPJ01000017
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
175214
175129
-
Leu
CAG
[ENA]
¡û
>W141710450
JMPJ01000069
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
35358
35443
+
Leu
CAG
[ENA]
¡û
>W141710732
JMPO01000126
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
94200
94285
+
Leu
CAG
[ENA]
¡û
>W141710733
JMPO01000126
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
94322
94407
+
Leu
CAG
[ENA]
¡û
>W141710759
JMPO01000147
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
39495
39580
+
Leu
CAG
[ENA]
¡û
>W141816175
JQJR01000006
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
352072
352157
+
Leu
CAG
[ENA]
¡û
>W141816176
JQJR01000006
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
352194
352279
+
Leu
CAG
[ENA]
¡û
>W141816202
JQJR01000017
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
40114
40199
+
Leu
CAG
[ENA]
¡û
>W1910584880
JYDE01000011
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
39653
39738
+
Leu
CAG
[ENA]
¡û
>W1910584912
JYDF01000010
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
150745
150830
+
Leu
CAG
[ENA]
¡û
>W1910584942
JYDF01000082
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
13638
13553
-
Leu
CAG
[ENA]
¡û
>W1910584983
JYDG01000080
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
40165
40250
+
Leu
CAG
[ENA]
¡û
>W1910649329
LXYV01000005
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
35378
35463
+
Leu
CAG
[ENA]
¡û
>W1910649338
LXYV01000056
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
579
494
-
Leu
CAG
[ENA]
¡û
>W1910649385
LXYV01000789
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
331007
331092
+
Leu
CAG
[ENA]
¡û
>W1910649386
LXYV01000789
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
331150
331235
+
Leu
CAG
[ENA]
¡û
>W1910649387
LXYV01000789
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
331285
331370
+
Leu
CAG
[ENA]
¡û
>W1910655805
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
3664936
3665021
+
Leu
CAG
[ENA]
¡û
>W1910655816
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
4159292
4159207
-
Leu
CAG
[ENA]
¡û
>W1910696159
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
1390285
1390200
-
Leu
CAG
[ENA]
¡û
>W1910696165
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
654978
654893
-
Leu
CAG
[ENA]
¡û
>W1910750384
MJIB01000003
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
212079
212164
+
Leu
CAG
[ENA]
¡û
>W1910750385
MJIB01000003
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
212201
212286
+
Leu
CAG
[ENA]
¡û
>W1910750429
MJIB01000013
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
39654
39739
+
Leu
CAG
[ENA]
¡û
>W1911239276
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
932186
932271
+
Leu
CAG
[ENA]
¡û
>W1911239333
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
1379559
1379474
-
Leu
CAG
[ENA]
¡û
>W1911239334
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
1379437
1379352
-
Leu
CAG
[ENA]
¡û
>W1911686111
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
618573
618658
+
Leu
CAG
[ENA]
¡û
>W1911686172
QKVV01000002
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
332754
332669
-
Leu
CAG
[ENA]
¡û
>W1911686173
QKVV01000002
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
332632
332547
-
Leu
CAG
[ENA]
¡û
>W1911693600
QLTF01000001
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
500582
500667
+
Leu
CAG
[ENA]
¡û
>W1911693601
QLTF01000001
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
500704
500789
+
Leu
CAG
[ENA]
¡û
>W1911693655
QLTF01000012
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
60149
60064
-
Leu
CAG
[ENA]
¡û
>W1911824540
QZWI01000006
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
57899
57814
-
Leu
CAG
[ENA]
¡û
>W1911824556
QZWI01000015
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
39650
39735
+
Leu
CAG
[ENA]
¡û
>W1810149968
PITQ01000001
Gammaproteobacteria
Rahnella sp. AA [PITQ]
293210
293125
-
Leu
CAG
[ENA]
¡û
>W1810149969
PITQ01000001
Gammaproteobacteria
Rahnella sp. AA [PITQ]
293088
293003
-
Leu
CAG
[ENA]
¡û
>W1810150017
PITQ01000012
Gammaproteobacteria
Rahnella sp. AA [PITQ]
99609
99524
-
Leu
CAG
[ENA]
¡û
>W1810239911
PPSR01000002
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
55525
55440
-
Leu
CAG
[ENA]
¡û
>W1810239912
PPSR01000002
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
55403
55318
-
Leu
CAG
[ENA]
¡û
>W1810239940
PPSR01000020
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
27737
27652
-
Leu
CAG
[ENA]
¡û
>C11118338
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
4182171
4182256
+
Leu
CAG
[Ensembl]
¡û
>C11118339
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
4182293
4182378
+
Leu
CAG
[Ensembl]
¡û
>C11118348
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
4644672
4644587
-
Leu
CAG
[Ensembl]
¡û
>W1511433709
JUHL01000001
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
307453
307368
-
Leu
CAG
[ENA]
¡û
>W1511433710
JUHL01000001
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
307331
307246
-
Leu
CAG
[ENA]
¡û
>W1511433760
JUHL01000013
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
39182
39267
+
Leu
CAG
[ENA]
¡û
>W1511433788
JUHM01000004
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
108759
108844
+
Leu
CAG
[ENA]
¡û
>W1511433789
JUHM01000004
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
108881
108966
+
Leu
CAG
[ENA]
¡û
>W1511433827
JUHM01000039
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
40111
40196
+
Leu
CAG
[ENA]
¡û
>W1511481255
JWJQ01000025
Gammaproteobacteria
Aeromonas hydrophila L14f [JWJQ]
110090
110175
+
Leu
CAG
[ENA]
¡û
>W1511481317
JWJR01000025
Gammaproteobacteria
Aeromonas jandaei L14h [JWJR]
109991
110076
+
Leu
CAG
[ENA]
¡û
>C121009629
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
4192789
4192874
+
Leu
CAG
[Ensembl]
¡û
>C121009630
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
4192911
4192996
+
Leu
CAG
[Ensembl]
¡û
>C121009639
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
4643491
4643406
-
Leu
CAG
[Ensembl]
¡û
>C121012483
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
4276191
4276276
+
Leu
CAG
[Ensembl]
¡û
>C121012484
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
4276313
4276398
+
Leu
CAG
[Ensembl]
¡û
>C121012493
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
4742687
4742602
-
Leu
CAG
[Ensembl]
¡û
>W1610733874
LMLJ01000002
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
105878
105793
-
Leu
CAG
[ENA]
¡û
>W1610733891
LMLJ01000012
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
679441
679356
-
Leu
CAG
[ENA]
¡û
>W1610733892
LMLJ01000012
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
679319
679234
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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