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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86462 (66 seq.)
>W1710864537
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
1093625
1093542
-
Leu
CAG
[ENA]
¡û
>W1710868829
LMJK01000001
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
278124
278207
+
Leu
CAG
[ENA]
¡û
>W1710875923
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
2462537
2462454
-
Leu
CAG
[ENA]
¡û
>W1710881428
LMTB01000036
Actinomycetota
Dietzia timorensis [LMTB]
81202
81119
-
Leu
CAG
[ENA]
¡û
>W131240874
BAOP01000036
Actinomycetota
Gordonia malaquae NBRC 108250 [BAOP]
1990
1905
-
Leu
CAG
[ENA]
¡û
>W1711589079
MODW01000007
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
10773
10690
-
Leu
CAG
[ENA]
¡û
>C171044533
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
53565
53648
+
Leu
CAG
-
¡û
>C171109665
CP020570
Actinomycetota
Streptomyces violaceoruber S21 [CP020570]
3835948
3835863
-
Leu
CAG
-
¡û
>WENV183746627
POYE01040159
[POYE] biofilm metagenome; steel pipe from biofilm reactor
84
1
-
Leu
CAG
[ENA]
¢þ
>C181153079
CP027434
Actinomycetota
Microbacterium sp. str. 'China' [CP027434]
29434
29517
+
Leu
CAG
-
¡û
>C181200414
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
30655
30738
+
Leu
CAG
-
¡û
>C191093796
CP032698
Actinomycetota
Streptomyces hundungensis BH38 [CP032698]
4378660
4378743
+
Leu
CAG
-
¡û
>C191185954
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
31017
31100
+
Leu
CAG
-
¡û
>W141756243
JNXB01000007
Actinomycetota
Streptomyces brasiliensis [JNXB]
23877
23962
+
Leu
CAG
[ENA]
¡û
>W141757437
JNXW01002269
Actinomycetota
Streptomyces californicus [JNXW]
1604
1519
-
Leu
CAG
[ENA]
¡û
>W141757650
JNYB01000189
Actinomycetota
Streptomyces californicus [JNYB]
27502
27417
-
Leu
CAG
[ENA]
¡û
>W141758413
JNYP01000005
Actinomycetota
Streptomyces vinaceus [JNYP]
220064
220149
+
Leu
CAG
[ENA]
¡û
>W141760090
JNZU01003848
Actinomycetota
Streptomyces griseus subsp. rhodochrous [JNZU]
1862
1777
-
Leu
CAG
[ENA]
¡û
>W141760360
JNZZ01000008
Actinomycetota
Streptomyces californicus [JNZZ]
23877
23962
+
Leu
CAG
[ENA]
¡û
>W141762248
JOBG01000018
Actinomycetota
Streptomyces purpeochromogenes [JOBG]
17223
17308
+
Leu
CAG
[ENA]
¡û
>W141762745
JOBQ01000003
Actinomycetota
Streptomyces californicus puniceus [JOBQ]
179089
179174
+
Leu
CAG
[ENA]
¡û
>W141764678
JOCW01000003
Actinomycetota
Streptomyces sp. NRRL WC-3540 [JOCW]
181556
181641
+
Leu
CAG
[ENA]
¡û
>W141765532
JODK01000015
Actinomycetota
Streptomyces purpeochromogenes [JODK]
17223
17308
+
Leu
CAG
[ENA]
¡û
>W141768118
JOFA01000013
Actinomycetota
Streptomyces californicus puniceus [JOFA]
219614
219529
-
Leu
CAG
[ENA]
¡û
>W141768208
JOFB01001276
Actinomycetota
Streptomyces exfoliatus [JOFB]
288
205
-
Leu
CAG
[ENA]
¡û
>W141768275
JOFD01000002
Actinomycetota
Streptomyces griseus subsp. rhodochrous [JOFD]
181669
181754
+
Leu
CAG
[ENA]
¡û
>W141768405
JOFF01000001
Actinomycetota
Streptomyces griseus subsp. rhodochrous [JOFF]
275993
275908
-
Leu
CAG
[ENA]
¡û
>W141768493
JOFG01000009
Actinomycetota
Streptomyces californicus [JOFG]
432861
432776
-
Leu
CAG
[ENA]
¡û
>W141771426
JOHD01000066
Actinomycetota
Streptomyces sp. NRRL F-5702 [JOHD]
24088
24173
+
Leu
CAG
[ENA]
¡û
>W141771570
JOHG01000004
Actinomycetota
Streptomyces sp. NRRL B-1381 [JOHG]
90768
90683
-
Leu
CAG
[ENA]
¡û
>W141773198
JOIH01000009
Actinomycetota
Streptomyces sp. NRRL F-2202 [JOIH]
174830
174745
-
Leu
CAG
[ENA]
¡û
>W141773566
JOIO01000004
Actinomycetota
Streptomyces sp. NRRL F-3273 [JOIO]
174107
174022
-
Leu
CAG
[ENA]
¡û
>W141773650
JOIP01000011
Actinomycetota
Streptomyces sp. NRRL F-3218 [JOIP]
90699
90614
-
Leu
CAG
[ENA]
¡û
>W141816327
JQJU01000010
Actinomycetota
Streptomyces atratus [JQJU]
71706
71621
-
Leu
CAG
[ENA]
¡û
>W1911083382
NNBJ01000006
Actinomycetota
Streptomyces sp. CB01201 [NNBJ]
132192
132109
-
Leu
CAG
[ENA]
¡û
>W1911279886
NTGS01000122
Actinomycetota
Streptomyces sp. st140 [NTGS]
21942
21859
-
Leu
CAG
[ENA]
¡û
>W1911280526
NTHC01000070
Actinomycetota
Streptomyces sp. ms184 [NTHC]
22016
21933
-
Leu
CAG
[ENA]
¡û
>W1911280724
NTHF01000009
Actinomycetota
Streptomyces sp. gb14 [NTHF]
171089
171006
-
Leu
CAG
[ENA]
¡û
>W1911280911
NTHI01000081
Actinomycetota
Streptomyces sp. b94 [NTHI]
10121
10204
+
Leu
CAG
[ENA]
¡û
>W1911575710
PDIQ01000025
Actinomycetota
Streptomyces sp. NP10 [PDIQ]
87164
87247
+
Leu
CAG
[ENA]
¡û
>W1810735748
QOLA01000011
Actinomycetota
Streptomyces sp. SDr-06 [QOLA]
63474
63391
-
Leu
CAG
[ENA]
¡û
>C151093249
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
2642189
2642272
+
Leu
CAG
-
¡û
>W1510465580
CQDM01000091
Actinomycetota
Mycobacterium tuberculosis 201035 [CQDM]
445
528
+
Leu
CAG
[ENA]
¡û
>W1511509288
JXQX01000027
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
59286
59203
-
Leu
CAG
[ENA]
¡û
>W1511528706
JYIU01000040
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
108425
108508
+
Leu
CAG
[ENA]
¡û
>W1511528752
JYIV01000024
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
105562
105645
+
Leu
CAG
[ENA]
¡û
>W1511695714
LGCY01000088
Actinomycetota
Streptomyces sp. NRRL F-2295 [LGCY]
87208
87123
-
Leu
CAG
[ENA]
¡û
>W1511696026
LGDD01000047
Actinomycetota
Streptomyces sp. WM6378 [LGDD]
117015
117100
+
Leu
CAG
[ENA]
¡û
>W1511696159
LGDF01000102
Actinomycetota
Streptomyces sp. MMG1522 [LGDF]
82382
82297
-
Leu
CAG
[ENA]
¡û
>W1511707349
LGUZ01000001
Actinomycetota
Streptomyces griseus subsp. rhodochrous NRRL B-2929 [LGUZ]
181610
181695
+
Leu
CAG
[ENA]
¡û
>C161060537
CP013738
Actinomycetota
Streptomyces globisporus C-1027 [CP013738]
3934953
3934868
-
Leu
CAG
[Ensembl]
¡û
>W1610068399
BCRH01000144
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
1017
1100
+
Leu
CAG
[ENA]
¡û
>W121068418
AJUO01000078
Actinomycetota
Streptomyces globisporus C-1027 [AJUO]
50990
50905
-
Leu
CAG
[ENA]
¡û
>C131005315
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
82815
82898
+
Leu
CAG
[Ensembl]
¡û
>W1610726883
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
1093625
1093542
-
Leu
CAG
[ENA]
¡û
>W1610731175
LMJK01000001
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
278124
278207
+
Leu
CAG
[ENA]
¡û
>W1610743774
LMTB01000036
Actinomycetota
Dietzia timorensis [LMTB]
81202
81119
-
Leu
CAG
[ENA]
¡û
>W1710065772
BCRH01000144
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
1017
1100
+
Leu
CAG
[ENA]
¡û
>W1710511523
FMYS01000004
Actinomycetota
Streptomyces sp. LaPpAH-199 [FMYS]
549717
549632
-
Leu
CAG
[ENA]
¡û
>W1710513417
FNAD01000005
Actinomycetota
Glycomyces harbinensis [FNAD]
140517
140600
+
Leu
CAG
[ENA]
¡û
>W1710534589
FNRZ01000001
Actinomycetota
Gordonia malaquae [FNRZ]
1506
1591
+
Leu
CAG
[ENA]
¡û
>W1710534590
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
1832
1917
+
Leu
CAG
[ENA]
¡û
>W1710534621
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
8229
8144
-
Leu
CAG
[ENA]
¡û
>W1710535608
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
270222
270139
-
Leu
CAG
[ENA]
¡û
>W1710773114
LIVT01000003
Actinomycetota
Streptomyces sp. CB02366 [LIVT]
981699
981784
+
Leu
CAG
[ENA]
¡û
>W1710773969
LIXK01000004
Actinomycetota
Streptomyces sp. CB02130 [LIXK]
200497
200412
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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