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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86704 (62 seq.)
>W1710860339
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2802502
2802417
-
Leu
CAA
[ENA]
¡û
>W1710864343
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
515171
515256
+
Leu
CAA
[ENA]
¡û
>W1710867910
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
692738
692823
+
Leu
CAA
[ENA]
¡û
>W1710870605
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2081536
2081451
-
Leu
CAA
[ENA]
¡û
>W1710879762
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
367804
367889
+
Leu
CAA
[ENA]
¡û
>W1711003298
LQGY01000025
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
97952
97867
-
Leu
CAA
[ENA]
¡û
>W131217903
ATXF01000004
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
310615
310530
-
Leu
CAA
[ENA]
¡û
>W131217952
ATXG01000002
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
354701
354616
-
Leu
CAA
[ENA]
¡û
>W131218456
ATXT01000011
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
256540
256623
+
Leu
CAA
[ENA]
¡û
>W131224990
AUDF01000003
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
334959
335042
+
Leu
CAA
[ENA]
¡û
>W131235226
AULK01000001
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
236045
236128
+
Leu
CAA
[ENA]
¡û
>W1711589052
MODW01000002
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
705582
705667
+
Leu
CAA
[ENA]
¡û
>W1711724724
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
339683
339768
+
Leu
CAA
[ENA]
¡û
>W1711963144
NCTV01000036
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
109819
109904
+
Leu
CAA
[ENA]
¡û
>WENV180016692
FSVT01000623
[FSVT] metagenome; soil
1903
1820
-
Leu
CAA
[ENA]
¢þ
>WENV180017379
FSWU01000431
[FSWU] metagenome; soil
17232
17315
+
Leu
CAA
[ENA]
¢þ
>WENV180026468
FTIT01439314
[FTIT] metagenome; soil
168
85
-
Leu
CAA
[ENA]
¢þ
>C181143927
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1507727
1507810
+
Leu
CAA
-
¡û
>C191130415
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
2199275
2199359
+
Leu
CAA
-
¡û
>C191183344
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
2005846
2005761
-
Leu
CAA
-
¡û
>W1910377778
FUKR01000032
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
81908
81825
-
Leu
CAA
[ENA]
¡û
>W1810089932
PGFB01000002
Actinomycetota
Compostimonas suwonensis DSM 25625 [PGFB]
64355
64270
-
Leu
CAA
[ENA]
¡û
>W1810280778
PSWU01000007
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
480916
480999
+
Leu
CAA
[ENA]
¡û
>W1810280821
PSWV01000008
Actinomycetota
Rathayibacter toxicus FH89 [PSWV]
484587
484670
+
Leu
CAA
[ENA]
¡û
>W1810280864
PSWW01000008
Actinomycetota
Rathayibacter toxicus FH86 [PSWW]
484587
484670
+
Leu
CAA
[ENA]
¡û
>W1810280907
PSWX01000007
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
480916
480999
+
Leu
CAA
[ENA]
¡û
>W1810280950
PSWY01000008
Actinomycetota
Rathayibacter toxicus FH82 [PSWY]
484587
484670
+
Leu
CAA
[ENA]
¡û
>W1810280993
PSWZ01000007
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
484587
484670
+
Leu
CAA
[ENA]
¡û
>W1810281036
PSXA01000006
Actinomycetota
Rathayibacter toxicus FH78 [PSXA]
480916
480999
+
Leu
CAA
[ENA]
¡û
>W1810281079
PSXB01000006
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
480916
480999
+
Leu
CAA
[ENA]
¡û
>W1810281134
PSXC01000009
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
484588
484671
+
Leu
CAA
[ENA]
¡û
>W1810281177
PSXD01000007
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
480916
480999
+
Leu
CAA
[ENA]
¡û
>W1810281220
PSXE01000009
Actinomycetota
Rathayibacter toxicus FH146 [PSXE]
484598
484681
+
Leu
CAA
[ENA]
¡û
>W1810281263
PSXF01000007
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
484587
484670
+
Leu
CAA
[ENA]
¡û
>W1810281306
PSXG01000007
Actinomycetota
Rathayibacter toxicus FH142 [PSXG]
484677
484760
+
Leu
CAA
[ENA]
¡û
>W1810281349
PSXH01000008
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
480915
480998
+
Leu
CAA
[ENA]
¡û
>W1810281392
PSXI01000008
Actinomycetota
Rathayibacter toxicus FH140 [PSXI]
484677
484760
+
Leu
CAA
[ENA]
¡û
>W1810281436
PSXJ01000009
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
484677
484760
+
Leu
CAA
[ENA]
¡û
>W1810281479
PSXK01000009
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
484586
484669
+
Leu
CAA
[ENA]
¡û
>W1810281522
PSXL01000007
Actinomycetota
Rathayibacter toxicus FH137 [PSXL]
480916
480999
+
Leu
CAA
[ENA]
¡û
>W1810281565
PSXM01000008
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
484662
484745
+
Leu
CAA
[ENA]
¡û
>W1810281608
PSXN01000009
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
512984
513067
+
Leu
CAA
[ENA]
¡û
>W1810392936
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
3325368
3325285
-
Leu
CAA
[ENA]
¡û
>W1810568999
QEFA01000002
Actinomycetota
Agromyces badenianii 845 [QEFA]
378587
378502
-
Leu
CAA
[ENA]
¡û
>W1810569020
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
193959
194042
+
Leu
CAA
[ENA]
¡û
>W1810860838
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
2245703
2245618
-
Leu
CAA
[ENA]
¡û
>C151073246
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
1513007
1513090
+
Leu
CAA
[Ensembl]
¡û
>W1511589857
LBFI01000044
Actinomycetota
Rathayibacter toxicus FH142 [LBFI]
47997
47914
-
Leu
CAA
[ENA]
¡û
>C161055007
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
2244468
2244385
-
Leu
CAA
-
¡û
>C161061362
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
2602383
2602298
-
Leu
CAA
[Ensembl]
¡û
>C161063217
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
2183977
2183892
-
Leu
CAA
[Ensembl]
¡û
>W1610722685
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2802502
2802417
-
Leu
CAA
[ENA]
¡û
>W1610726689
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
515171
515256
+
Leu
CAA
[ENA]
¡û
>W1610730256
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
692738
692823
+
Leu
CAA
[ENA]
¡û
>W1610732951
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2081536
2081451
-
Leu
CAA
[ENA]
¡û
>W1610742108
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
367804
367889
+
Leu
CAA
[ENA]
¡û
>W1610853863
LQGY01000025
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
97952
97867
-
Leu
CAA
[ENA]
¡û
>W1710540801
FNXD01000007
Actinomycetota
Leifsonia sp. CL154 [FNXD]
96040
95955
-
Leu
CAA
[ENA]
¡û
>W1710568272
FOTM01000007
Actinomycetota
Leifsonia sp. CL147 [FOTM]
66314
66399
+
Leu
CAA
[ENA]
¡û
>W1710575403
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2395705
2395620
-
Leu
CAA
[ENA]
¡û
>W1710594676
FSRJ01000001
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
799863
799778
-
Leu
CAA
[ENA]
¡û
>W1710604014
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
1715294
1715209
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK