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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86769 (56 seq.)
>W1711210439
LXIE01000001
Bacteroidota
Aequorivita soesokkakensis [LXIE]
132396
132312
-
Ser
GCT
[ENA]
¡û
>W1711305173
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1407597
1407683
+
Ser
GCT
[ENA]
¡û
>W1711413544
MGWI01000011
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
428
512
+
Ser
GCT
[ENA]
¡û
>W131222419
AUBG01000002
Bacteroidota
Aequorivita capsosiphonis DSM 23843 [AUBG]
114684
114600
-
Ser
GCT
[ENA]
¡û
>W131224677
AUCZ01000006
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
177831
177747
-
Ser
GCT
[ENA]
¡û
>W1711711553
MTAZ01000019
Bacteroidota
Arenibacter amylolyticus AK53 [MTAZ]
207573
207657
+
Ser
GCT
[ENA]
¡û
>WENV180285447
OBID01429647
[OBID] metagenome; sludge
145
229
+
Ser
GCT
[ENA]
¢þ
>W141094569
AVCS01000004
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
100108
100192
+
Ser
GCT
[ENA]
¡û
>WENV181223635
OFDC01054964
[OFDC] hot springs metagenome; Water
293
209
-
Ser
GCT
[ENA]
¢þ
>WENV181838141
OGVM01012099
[OGVM] freshwater metagenome; freshwater
112
28
-
Ser
GCT
[ENA]
¢þ
>WENV183623596
OOGA01015675
[OOGA] marine metagenome; sea ice
539
455
-
Ser
GCT
[ENA]
¢þ
>WENV183628373
OOGN01025748
[OOGN] marine metagenome; sea ice
25
109
+
Ser
GCT
[ENA]
¢þ
>WENV183727024
PJTO01002021
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
2345
2429
+
Ser
GCT
[ENA]
¢þ
>WENV183728842
PJTQ01000677
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
4966
5050
+
Ser
GCT
[ENA]
¢þ
>WENV183729770
PJTR01000068
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
120597
120513
-
Ser
GCT
[ENA]
¢þ
>WENV183731090
PJTS01008660
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
716
632
-
Ser
GCT
[ENA]
¢þ
>WENV183736946
PJUD01000113
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
122
36
-
Ser
GCT
[ENA]
¢þ
>WENV183738223
PJUD01126120
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
422
338
-
Ser
GCT
[ENA]
¢þ
>WENV183738336
PJUD01165160
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
256
342
+
Ser
GCT
[ENA]
¢þ
>WENV183738719
PJUE01000127
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
122
36
-
Ser
GCT
[ENA]
¢þ
>WENV183738753
PJUE01000157
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2
88
+
Ser
GCT
[ENA]
¢þ
>WENV183739631
PJUE01044731
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
230
316
+
Ser
GCT
[ENA]
¢þ
>WENV183739947
PJUF01000088
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
122
36
-
Ser
GCT
[ENA]
¢þ
>WENV183740537
PJUF01003196
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4017
3933
-
Ser
GCT
[ENA]
¢þ
>WENV183741302
PJUF01080832
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
256
342
+
Ser
GCT
[ENA]
¢þ
>WENV170296972
CESE01076289
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
198
112
-
Ser
GCT
[ENA]
¢þ
>WENV170646800
JQIA01003441
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
162
76
-
Ser
GCT
[ENA]
¢þ
>WENV170705781
LNAP01000273
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
100319
100403
+
Ser
GCT
[ENA]
¢þ
>C181196555
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
2516779
2516863
+
Ser
GCT
-
¡û
>C191133018
CP034951
Bacteroidota
Aequorivita sp. H23M31 [CP034951]
1604094
1604178
+
Ser
GCT
-
¡û
>W141702897
JMLU01000010
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
76116
76200
+
Ser
GCT
[ENA]
¡û
>W1911501455
OENF01000039
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
37935
37851
-
Ser
GCT
[ENA]
¡û
>W1810693653
QLLN01000001
Bacteroidota
Arenibacter echinorum DSM 23522 [QLLN]
477029
477113
+
Ser
GCT
[ENA]
¡û
>W1810694871
QLMI01000005
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
205245
205329
+
Ser
GCT
[ENA]
¡û
>W1810696086
QLSZ01000003
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
192504
192420
-
Ser
GCT
[ENA]
¡û
>SRA1024964
SRR035084.448160
454 Sequencing (SRP001805)
143
227
+
Ser
GCT
[SRA]
>ENV09003945
ADIF01001420
Marine metagenome apSum_C1
724
638
-
Ser
GCT
[ENA]
¡û
>W1511576858
LAQB01000078
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
2274
2188
-
Ser
GCT
[ENA]
¡û
>C121010155
CP003280
Bacteroidota
Aequorivita sublithincola DSM 14238 [CP003280]
3043760
3043844
+
Ser
GCT
[Ensembl]
¡û
>W1610535047
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102149
102233
+
Ser
GCT
[ENA]
¡û
>W1610535166
JRLZ01000003
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
188178
188094
-
Ser
GCT
[ENA]
¡û
>W1610998165
LXIE01000001
Bacteroidota
Aequorivita soesokkakensis [LXIE]
132396
132312
-
Ser
GCT
[ENA]
¡û
>W1611054715
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1407597
1407683
+
Ser
GCT
[ENA]
¡û
>W1710529051
FNNS01000008
Bacteroidota
Aequorivita viscosa [FNNS]
79120
79036
-
Ser
GCT
[ENA]
¡û
>W1710566230
FORU01000003
Bacteroidota
Myroides guanonis [FORU]
74552
74468
-
Ser
GCT
[ENA]
¡û
>W1710570709
FOVI01000005
Bacteroidota
Paenimyroides ummariense [FOVI]
48792
48706
-
Ser
GCT
[ENA]
¡û
>W1710570749
FOVI01000020
Bacteroidota
Paenimyroides ummariense [FOVI]
8234
8150
-
Ser
GCT
[ENA]
¡û
>W1710583576
FQUX01000004
Bacteroidota
Arenibacter palladensis [FQUX]
296873
296957
+
Ser
GCT
[ENA]
¡û
>W1710584555
FQVQ01000004
Bacteroidota
Flavobacterium fontis [FQVQ]
180501
180417
-
Ser
GCT
[ENA]
¡û
>W1710587809
FQYV01000007
Bacteroidota
Aequorivita viscosa [FQYV]
78719
78635
-
Ser
GCT
[ENA]
¡û
>W1710593830
FRYK01000003
Bacteroidota
Flavobacterium cucumis [FRYK]
233689
233773
+
Ser
GCT
[ENA]
¡û
>W1710606147
FWXO01000002
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
410591
410507
-
Ser
GCT
[ENA]
¡û
>W1710606315
FWXS01000002
Bacteroidota
Moheibacter sediminis [FWXS]
440855
440769
-
Ser
GCT
[ENA]
¡û
>W1710608021
FXAO01000001
Bacteroidota
Arenibacter troitsensis [FXAO]
818548
818632
+
Ser
GCT
[ENA]
¡û
>W1710637283
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102149
102233
+
Ser
GCT
[ENA]
¡û
>W1710637402
JRLZ01000003
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
188178
188094
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK