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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87288 (67 seq.)
>A171002617
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1440045
1440129
+
Leu
TAG
-
¡û
>A171003950
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1451478
1451562
+
Leu
TAG
-
¡û
>A171005807
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
3094812
3094896
+
Leu
TAG
-
¡û
>A171007288
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
1375896
1375812
-
Leu
TAG
-
¡û
>WENV180318337
OBKM01000434
[OBKM] metagenome; water
11132
11217
+
Leu
TAG
[ENA]
¢þ
>WENV180318717
OBKM01006381
[OBKM] metagenome; water
2290
2374
+
Leu
TAG
[ENA]
¢þ
>WENV180318822
OBKM01013604
[OBKM] metagenome; water
1146
1230
+
Leu
TAG
[ENA]
¢þ
>At0750
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
750998
751082
+
Leu
TAG
[Ensembl]
¡û
>WENV170659949
JXWS01052865
[JXWS] soil metagenome; rice field; elevated CO2
454
370
-
Leu
TAG
[ENA]
¢þ
>WENV170681885
LFFM01003882
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
26
110
+
Leu
TAG
[ENA]
¢þ
>WENV170682028
LFFM01005128
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6894
6978
+
Leu
TAG
[ENA]
¢þ
>WENV170682112
LFFM01006204
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4493
4577
+
Leu
TAG
[ENA]
¢þ
>WENV170682230
LFFM01007644
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5769
5684
-
Leu
TAG
[ENA]
¢þ
>W1910006678
BBJN01000055
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
18644
18729
+
Leu
TAG
[ENA]
¡û
>W1910175099
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
209118
209033
-
Leu
TAG
[ENA]
¡û
>W1910193765
CVRT01000148
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
21760
21845
+
Leu
TAG
[ENA]
¡û
>W1910193781
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
516210
516294
+
Leu
TAG
[ENA]
¡û
>W1910226736
FNBK01000008
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
82183
82099
-
Leu
TAG
[ENA]
¡û
>W1910228385
FNOF01000004
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
36851
36767
-
Leu
TAG
[ENA]
¡û
>W1910230398
FOPZ01000004
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
60694
60610
-
Leu
TAG
[ENA]
¡û
>W1910230618
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
61631
61716
+
Leu
TAG
[ENA]
¡û
>W1910230679
FOYN01000008
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
3722
3637
-
Leu
TAG
[ENA]
¡û
>W1910546950
FZNK01000001
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
710414
710498
+
Leu
TAG
[ENA]
¡û
>W1910572738
JNFH02000005
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
5069
5154
+
Leu
TAG
[ENA]
¡û
>W1910583045
JXAO01000008
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
14274
14358
+
Leu
TAG
[ENA]
¡û
>W1910617599
LIUF01000003
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
328055
328139
+
Leu
TAG
[ENA]
¡û
>W1910828016
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2353936
2354020
+
Leu
TAG
[ENA]
¡û
>W1910873632
NDWV01000003
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
56069
56153
+
Leu
TAG
[ENA]
¡û
>W1910880437
NEDJ01000015
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
22923
22839
-
Leu
TAG
[ENA]
¡û
>W1910891324
NEWI01000003
Euryarchaeota
Halorubrum sp. SD612 [NEWI]
26276
26192
-
Leu
TAG
[ENA]
¡û
>W1910891415
NEWJ01000062
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
2341
2425
+
Leu
TAG
[ENA]
¡û
>W1910911674
NHNZ01000051
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
132912
132996
+
Leu
TAG
[ENA]
¡û
>W1910911759
NHOA01000139
Euryarchaeota
Halorubrum persicum C49 [NHOA]
23284
23199
-
Leu
TAG
[ENA]
¡û
>W1910911944
NHOV01000615
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
115957
115873
-
Leu
TAG
[ENA]
¡û
>W1910912006
NHOW01000072
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
57073
57157
+
Leu
TAG
[ENA]
¡û
>W1910912054
NHOX01000040
Euryarchaeota
Halorubrum sp. Ib24 [NHOX]
227469
227385
-
Leu
TAG
[ENA]
¡û
>W1910912093
NHOY01000106
Euryarchaeota
Halorubrum sp. Hd13 [NHOY]
51846
51930
+
Leu
TAG
[ENA]
¡û
>W1910912121
NHOZ01000051
Euryarchaeota
Halorubrum ezzemoulense Ga36 [NHOZ]
37423
37507
+
Leu
TAG
[ENA]
¡û
>W1910912185
NHPA01000079
Euryarchaeota
Halorubrum ezzemoulense Ga2p [NHPA]
43856
43772
-
Leu
TAG
[ENA]
¡û
>W1910912218
NHPB01000064
Euryarchaeota
Halorubrum ezzemoulense G37 [NHPB]
30126
30042
-
Leu
TAG
[ENA]
¡û
>W1910912253
NHPC01000027
Euryarchaeota
Halorubrum ezzemoulense Fb21 [NHPC]
220239
220155
-
Leu
TAG
[ENA]
¡û
>W1910912277
NHPD01000037
Euryarchaeota
Halorubrum ezzemoulense Ec15 [NHPD]
275271
275355
+
Leu
TAG
[ENA]
¡û
>W1910912328
NHPE01000119
Euryarchaeota
Halorubrum sp. Eb13 [NHPE]
8670
8754
+
Leu
TAG
[ENA]
¡û
>W1910912358
NHPF01000077
Euryarchaeota
Halorubrum sp. Ea8 [NHPF]
4636
4552
-
Leu
TAG
[ENA]
¡û
>W1910912414
NHPG01000117
Euryarchaeota
Halorubrum sp. Ea1 [NHPG]
79215
79299
+
Leu
TAG
[ENA]
¡û
>W1910912514
NHPJ01000092
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
110744
110660
-
Leu
TAG
[ENA]
¡û
>W1911245484
NSKC01000002
Euryarchaeota
Halorubrum salipaludis WN019 [NSKC]
518095
518179
+
Leu
TAG
[ENA]
¡û
>W1911709475
QPLN01000004
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
323295
323210
-
Leu
TAG
[ENA]
¡û
>W1911709608
QPLQ01000004
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
105087
105172
+
Leu
TAG
[ENA]
¡û
>W1911770063
QXIK01000025
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
17043
17128
+
Leu
TAG
[ENA]
¡û
>W1610005936
ALWQ01000003
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
255151
255067
-
Leu
TAG
[ENA]
¡û
>W1610012942
AOJD01000029
Euryarchaeota
Halorubrum tebenquichense DSM 14210 [AOJD]
27892
27976
+
Leu
TAG
[ENA]
¡û
>W1610013014
AOJE01000070
Euryarchaeota
Halorubrum saccharovorum DSM 1137 [AOJE]
44910
44825
-
Leu
TAG
[ENA]
¡û
>W1610013067
AOJG01000010
Euryarchaeota
Halorubrum lipolyticum DSM 21995 [AOJG]
73332
73416
+
Leu
TAG
[ENA]
¡û
>W1610013237
AOJK01000008
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
8562
8646
+
Leu
TAG
[ENA]
¡û
>W1610013412
AOJO01000011
Euryarchaeota
Halorubrum hochstenium ATCC 700873 [AOJO]
1566
1650
+
Leu
TAG
[ENA]
¡û
>W1610014149
AOLQ01000065
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
153244
153328
+
Leu
TAG
[ENA]
¡û
>W1610014246
AOLS01000102
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
192283
192198
-
Leu
TAG
[ENA]
¡û
>W1610014272
AOLW01000015
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
311668
311584
-
Leu
TAG
[ENA]
¡û
>W1610014313
AOLX01000014
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
302141
302056
-
Leu
TAG
[ENA]
¡û
>W1610014388
AOLY01000035
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
142917
142832
-
Leu
TAG
[ENA]
¡û
>W1610024336
ATXS01000013
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
33334
33418
+
Leu
TAG
[ENA]
¡û
>W1610061894
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
767238
767322
+
Leu
TAG
[ENA]
¡û
>W1610061958
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2204152
2204068
-
Leu
TAG
[ENA]
¡û
>W1610617573
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
961338
961254
-
Leu
TAG
[ENA]
¡û
>W1610779618
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
1432672
1432756
+
Leu
TAG
[ENA]
¡û
>W1610881023
LRHL01000023
Euryarchaeota
Haloarcula sp. K1 [LRHL]
326346
326430
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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