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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87344 (97 seq.)
>W1711233193
LYBT01000045
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBT]
226585
226498
-
Ser
GGA
[ENA]
¡û
>W1711233195
LYBT01000045
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBT]
213014
212927
-
Ser
GGA
[ENA]
¡û
>W1711233291
LYBU01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBU]
420753
420840
+
Ser
GGA
[ENA]
¡û
>W1711233293
LYBU01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBU]
434324
434411
+
Ser
GGA
[ENA]
¡û
>W1711272319
LZFH01000001
Gammaproteobacteria
Photobacterium damselae [LZFH]
427697
427784
+
Ser
GGA
[ENA]
¡û
>W1711272321
LZFH01000001
Gammaproteobacteria
Photobacterium damselae [LZFH]
441268
441355
+
Ser
GGA
[ENA]
¡û
>W1711272624
LZFN01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LZFN]
226245
226158
-
Ser
GGA
[ENA]
¡û
>W1711272626
LZFN01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LZFN]
212673
212586
-
Ser
GGA
[ENA]
¡û
>W1711326688
MBFW01000042
Gammaproteobacteria
Shewanella algae [MBFW]
49386
49299
-
Ser
GGA
[ENA]
¡û
>W1711326689
MBFW01000042
Gammaproteobacteria
Shewanella algae [MBFW]
49097
49010
-
Ser
GGA
[ENA]
¡û
>W1711341525
MCFX02000001
Gammaproteobacteria
Photobacterium damselae subsp. piscicida [MCFX]
1089530
1089617
+
Ser
GGA
[ENA]
¡û
>W1711341534
MCFX02000001
Gammaproteobacteria
Photobacterium damselae subsp. piscicida [MCFX]
1936468
1936381
-
Ser
GGA
[ENA]
¡û
>W1711360872
MDKA01000017
Gammaproteobacteria
Shewanella algae [MDKA]
8954
8867
-
Ser
GGA
[ENA]
¡û
>W1711360904
MDKA01000104
Gammaproteobacteria
Shewanella algae [MDKA]
24849
24936
+
Ser
GGA
[ENA]
¡û
>C171116633
CP021151
Gammaproteobacteria
Photobacterium damselae subsp. damselae KC-Na-1 [CP021151, CP021152]
986292
986379
+
Ser
GGA
-
¡û
>C171116635
CP021151
Gammaproteobacteria
Photobacterium damselae subsp. damselae KC-Na-1 [CP021151, CP021152]
999864
999951
+
Ser
GGA
-
¡û
>W141026815
AKYG01000084
Gammaproteobacteria
Photobacterium damselae subsp. piscicida DI21 [AKYG]
318
405
+
Ser
GGA
[ENA]
¡û
>W141026827
AKYG01000195
Gammaproteobacteria
Photobacterium damselae subsp. piscicida DI21 [AKYG]
377
290
-
Ser
GGA
[ENA]
¡û
>W141227772
BALL01000007
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
139483
139570
+
Ser
GGA
[ENA]
¡û
>W141227773
BALL01000007
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
139772
139859
+
Ser
GGA
[ENA]
¡û
>W141227964
BALO01000014
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
28293
28206
-
Ser
GGA
[ENA]
¡û
>W141227965
BALO01000014
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
28004
27917
-
Ser
GGA
[ENA]
¡û
>W141276189
JADP01000006
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
60139
60052
-
Ser
GGA
[ENA]
¡û
>W141276190
JADP01000006
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
59850
59763
-
Ser
GGA
[ENA]
¡û
>WENV170016209
AZIJ01016630
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
8462
8375
-
Ser
GGA
[ENA]
¢þ
>C181004450
AP018045
Gammaproteobacteria
Photobacterium damselae subsp. piscicida 91-197 [AP018045, AP018046]
1204326
1204413
+
Ser
GGA
-
¡û
>C181004452
AP018045
Gammaproteobacteria
Photobacterium damselae subsp. piscicida 91-197 [AP018045, AP018046]
1218677
1218764
+
Ser
GGA
-
¡û
>C181031054
CP018297
Gammaproteobacteria
Photobacterium damselae Phdp Wu-1 [CP018297, CP018298]
2039909
2039822
-
Ser
GGA
-
¡û
>C181031056
CP018297
Gammaproteobacteria
Photobacterium damselae Phdp Wu-1 [CP018297, CP018298]
2026337
2026250
-
Ser
GGA
-
¡û
>C191015542
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4018537
4018450
-
Ser
GGA
-
¡û
>C191015543
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4018248
4018161
-
Ser
GGA
-
¡û
>C191107881
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
2771351
2771264
-
Ser
GGA
-
¡û
>C191107882
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
2771062
2770975
-
Ser
GGA
-
¡û
>C191143343
CP035457
Gammaproteobacteria
Photobacterium damselae subsp. damselae KC-Na-NB1 [CP035457, CP035458]
118442
118355
-
Ser
GGA
-
¡û
>C191143345
CP035457
Gammaproteobacteria
Photobacterium damselae subsp. damselae KC-Na-NB1 [CP035457, CP035458]
104870
104783
-
Ser
GGA
-
¡û
>W1910617458
LIRM01000039
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
137718
137805
+
Ser
GGA
[ENA]
¡û
>W1910617459
LIRM01000039
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
138007
138094
+
Ser
GGA
[ENA]
¡û
>W1910645029
LVCY01000022
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
51199
51286
+
Ser
GGA
[ENA]
¡û
>W1910645030
LVCY01000022
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
61647
61734
+
Ser
GGA
[ENA]
¡û
>W1910645094
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
751701
751614
-
Ser
GGA
[ENA]
¡û
>W1910645095
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
751412
751325
-
Ser
GGA
[ENA]
¡û
>W1910645151
LVDK01000001
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
313865
313952
+
Ser
GGA
[ENA]
¡û
>W1910645152
LVDK01000001
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
314154
314241
+
Ser
GGA
[ENA]
¡û
>W1910645262
LVDU01000003
Gammaproteobacteria
Shewanella algae YHL [LVDU]
357278
357191
-
Ser
GGA
[ENA]
¡û
>W1910645263
LVDU01000003
Gammaproteobacteria
Shewanella algae YHL [LVDU]
356989
356902
-
Ser
GGA
[ENA]
¡û
>W1910664329
MBTQ01000107
Gammaproteobacteria
Photobacterium damselae Hep-2a-11 [MBTQ]
13461
13548
+
Ser
GGA
[ENA]
¡û
>W1910852584
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
882305
882392
+
Ser
GGA
[ENA]
¡û
>W1910905561
NGVS01000023
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
145502
145589
+
Ser
GGA
[ENA]
¡û
>W1910905562
NGVS01000023
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
145822
145909
+
Ser
GGA
[ENA]
¡û
>W1910905563
NGVS01000023
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
146142
146229
+
Ser
GGA
[ENA]
¡û
>W1910905564
NGVS01000023
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
146462
146549
+
Ser
GGA
[ENA]
¡û
>W1910927095
NIJK01000047
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
159507
159594
+
Ser
GGA
[ENA]
¡û
>W1910927116
NIJK01000054
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
205778
205865
+
Ser
GGA
[ENA]
¡û
>W1910927124
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
188776
188863
+
Ser
GGA
[ENA]
¡û
>W1910927125
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
189065
189152
+
Ser
GGA
[ENA]
¡û
>W1910927126
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
189354
189441
+
Ser
GGA
[ENA]
¡û
>W1910927127
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
189643
189730
+
Ser
GGA
[ENA]
¡û
>W1910927262
NIJM01000042
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
541
454
-
Ser
GGA
[ENA]
¡û
>W1910927268
NIJM01000055
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
7714
7627
-
Ser
GGA
[ENA]
¡û
>W1810406750
PYMI01000003
Gammaproteobacteria
Photobacterium ganghwense JCM 12487 [PYMI]
249370
249457
+
Ser
GGA
[ENA]
¡û
>W1810407277
PYMM01000002
Gammaproteobacteria
Photobacterium damselae BT-6 [PYMM]
252510
252423
-
Ser
GGA
[ENA]
¡û
>W1810407279
PYMM01000002
Gammaproteobacteria
Photobacterium damselae BT-6 [PYMM]
238939
238852
-
Ser
GGA
[ENA]
¡û
>W1810413245
PYOE01000034
Gammaproteobacteria
Photobacterium damselae ATCC 29689 [PYOE]
13642
13555
-
Ser
GGA
[ENA]
¡û
>W1810413348
PYOF01000038
Gammaproteobacteria
Photobacterium damselae ATCC 29688 [PYOF]
8804
8891
+
Ser
GGA
[ENA]
¡û
>W1810413409
PYOG01000001
Gammaproteobacteria
Photobacterium damselae ATCC 33539 [PYOG]
204716
204629
-
Ser
GGA
[ENA]
¡û
>W1810413411
PYOG01000001
Gammaproteobacteria
Photobacterium damselae ATCC 33539 [PYOG]
191146
191059
-
Ser
GGA
[ENA]
¡û
>W1810471870
QAGM01000009
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
124276
124363
+
Ser
GGA
[ENA]
¡û
>W1810533042
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
749227
749314
+
Ser
GGA
[ENA]
¡û
>W1810533046
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1261776
1261863
+
Ser
GGA
[ENA]
¡û
>W1810585850
QFDC01000009
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
16710
16797
+
Ser
GGA
[ENA]
¡û
>W1810585851
QFDC01000009
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
16999
17086
+
Ser
GGA
[ENA]
¡û
>W1810671643
QJSY01000001
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
17386
17299
-
Ser
GGA
[ENA]
¡û
>W1810671683
QJSY01000023
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
65987
65900
-
Ser
GGA
[ENA]
¡û
>W10110228
ADBS01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae CIP 102761 [ADBS]
1736426
1736339
-
Ser
GGA
[ENA]
¡û
>W10110230
ADBS01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae CIP 102761 [ADBS]
1722856
1722769
-
Ser
GGA
[ENA]
¡û
>W1510077728
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
127229
127142
-
Ser
GGA
[ENA]
¡û
>W1510077729
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
126940
126853
-
Ser
GGA
[ENA]
¡û
>W11112665
ADBS01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae CIP 102761 [ADBS]
1736426
1736339
-
Ser
GGA
[ENA]
¡û
>W11112667
ADBS01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae CIP 102761 [ADBS]
1722856
1722769
-
Ser
GGA
[ENA]
¡û
>W1511306492
JPMA01000003
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
205842
205755
-
Ser
GGA
[ENA]
¡û
>W1511306493
JPMA01000003
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
205554
205467
-
Ser
GGA
[ENA]
¡û
>W1511477900
JWGX01000004
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
101864
101777
-
Ser
GGA
[ENA]
¡û
>W1511477969
JWGX01000062
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
961
874
-
Ser
GGA
[ENA]
¡û
>W1511638862
LDOU01000002
Gammaproteobacteria
Photobacterium ganghwense DSM 22954 [LDOU]
79928
80015
+
Ser
GGA
[ENA]
¡û
>C121007373
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2068399
2068312
-
Ser
GGA
[Ensembl]
¡û
>W1610042085
BAXN01000008
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
19854
19767
-
Ser
GGA
[ENA]
¡û
>W1610042086
BAXN01000008
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
5395
5308
-
Ser
GGA
[ENA]
¡û
>W1610077869
BCZT01000036
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
18741
18828
+
Ser
GGA
[ENA]
¡û
>W1610077870
BCZT01000036
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
19030
19117
+
Ser
GGA
[ENA]
¡û
>W1611031883
LZFH01000001
Gammaproteobacteria
Photobacterium damselae [LZFH]
427697
427784
+
Ser
GGA
[ENA]
¡û
>W1611031885
LZFH01000001
Gammaproteobacteria
Photobacterium damselae [LZFH]
441268
441355
+
Ser
GGA
[ENA]
¡û
>W1710039179
BAXN01000008
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
19854
19767
-
Ser
GGA
[ENA]
¡û
>W1710039180
BAXN01000008
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
5395
5308
-
Ser
GGA
[ENA]
¡û
>W1710075427
BCZT01000036
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
18741
18828
+
Ser
GGA
[ENA]
¡û
>W1710075428
BCZT01000036
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
19030
19117
+
Ser
GGA
[ENA]
¡û
>W1710084757
BDMQ01000001
Gammaproteobacteria
Photobacterium damselae subsp. piscicida [BDMQ]
2492430
2492517
+
Ser
GGA
[ENA]
¡û
>W1710084759
BDMQ01000001
Gammaproteobacteria
Photobacterium damselae subsp. piscicida [BDMQ]
2506781
2506868
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK