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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87360 (120 seq.)
>W1711224081
LXTT01000039
Bacteroidota
Muricauda sp. CP2A [LXTT]
13307
13391
+
Ser
GCT
[ENA]
¡û
>W1712070424
NGNR01000002
Bacteroidota
Robiginitalea sediminis O458 [NGNR]
181109
181025
-
Ser
GCT
[ENA]
¡û
>WENV180005727
FLRW01275406
[FLRW] metagenome; saliva
38
122
+
Ser
GCT
[ENA]
¢þ
>W141042686
AMES01000011
Bacteroidota
Capnocytophaga sp. oral taxon 380 oral taxon 380 str. F0488 [AMES]
13697
13781
+
Ser
GCT
[ENA]
¡û
>W141042749
AMET01000159
Bacteroidota
Capnocytophaga sp. oral taxon 332 oral taxon 332 str. F0381 [AMET]
11836
11752
-
Ser
GCT
[ENA]
¡û
>W141042763
AMEU01000060
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
11383
11299
-
Ser
GCT
[ENA]
¡û
>W141042813
AMEV01000091
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
11959
11875
-
Ser
GCT
[ENA]
¡û
>WENV180718484
ODGG01004510
[ODGG] human metagenome; G_DNA_Buccal mucosa
472
388
-
Ser
GCT
[ENA]
¢þ
>WENV180719931
ODGJ01010667
[ODGJ] human metagenome; G_DNA_Tongue dorsum
2399
2315
-
Ser
GCT
[ENA]
¢þ
>WENV180732265
ODGY01000058
[ODGY] human metagenome; G_DNA_Supragingival plaque
15907
15991
+
Ser
GCT
[ENA]
¢þ
>WENV180732285
ODGY01000087
[ODGY] human metagenome; G_DNA_Supragingival plaque
10850
10934
+
Ser
GCT
[ENA]
¢þ
>WENV180751718
ODHS01124745
[ODHS] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV180764908
ODIB01004869
[ODIB] human metagenome; G_DNA_Supragingival plaque
1566
1482
-
Ser
GCT
[ENA]
¢þ
>WENV180767445
ODIG01000055
[ODIG] human metagenome; G_DNA_Tongue dorsum
68519
68603
+
Ser
GCT
[ENA]
¢þ
>WENV180777636
ODIL01036620
[ODIL] human metagenome; G_DNA_Supragingival plaque
116
200
+
Ser
GCT
[ENA]
¢þ
>WENV180777866
ODIM01000012
[ODIM] human metagenome; G_DNA_Supragingival plaque
16791
16875
+
Ser
GCT
[ENA]
¢þ
>WENV180778110
ODIM01000636
[ODIM] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV180779120
ODIN01000588
[ODIN] human metagenome; G_DNA_Throat
450
534
+
Ser
GCT
[ENA]
¢þ
>WENV180787891
ODIS01020144
[ODIS] human metagenome; G_DNA_Supragingival plaque
1673
1589
-
Ser
GCT
[ENA]
¢þ
>WENV180805160
ODJG01076419
[ODJG] human metagenome; G_DNA_Supragingival plaque
103
187
+
Ser
GCT
[ENA]
¢þ
>WENV180809784
ODJK01046746
[ODJK] human metagenome; G_DNA_Subgingival plaque
376
292
-
Ser
GCT
[ENA]
¢þ
>WENV180813403
ODJO01000611
[ODJO] human metagenome; G_DNA_Supragingival plaque
10155
10239
+
Ser
GCT
[ENA]
¢þ
>WENV180822145
ODJT01000034
[ODJT] human metagenome; G_DNA_Supragingival plaque
113135
113219
+
Ser
GCT
[ENA]
¢þ
>WENV180822954
ODJW01001216
[ODJW] human metagenome; G_DNA_Supragingival plaque
3482
3566
+
Ser
GCT
[ENA]
¢þ
>WENV180824850
ODJX01071084
[ODJX] human metagenome; G_DNA_Supragingival plaque
328
244
-
Ser
GCT
[ENA]
¢þ
>WENV180832560
ODKC01002280
[ODKC] human metagenome; G_DNA_Supragingival plaque
10182
10098
-
Ser
GCT
[ENA]
¢þ
>WENV180832635
ODKC01002846
[ODKC] human metagenome; G_DNA_Supragingival plaque
8372
8456
+
Ser
GCT
[ENA]
¢þ
>WENV180834815
ODKE01000013
[ODKE] human metagenome; G_DNA_Supragingival plaque
56275
56191
-
Ser
GCT
[ENA]
¢þ
>WENV180844448
ODKN01123523
[ODKN] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV180847787
ODKT01174577
[ODKT] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV180860455
ODLD01088684
[ODLD] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV180862008
ODLE01026751
[ODLE] human metagenome; G_DNA_Tongue dorsum
324
240
-
Ser
GCT
[ENA]
¢þ
>WENV180881682
ODMA01036512
[ODMA] human metagenome; G_DNA_Supragingival plaque
189
273
+
Ser
GCT
[ENA]
¢þ
>WENV180889936
ODMN01253480
[ODMN] human metagenome; G_DNA_Supragingival plaque
165
81
-
Ser
GCT
[ENA]
¢þ
>WENV180891400
ODMQ01000017
[ODMQ] human metagenome; G_DNA_Supragingival plaque
12689
12605
-
Ser
GCT
[ENA]
¢þ
>WENV180921431
ODTJ01000055
[ODTJ] human metagenome; G_DNA_Supragingival plaque
18203
18287
+
Ser
GCT
[ENA]
¢þ
>WENV180921935
ODTJ01000751
[ODTJ] human metagenome; G_DNA_Supragingival plaque
13717
13801
+
Ser
GCT
[ENA]
¢þ
>WENV180925493
ODTK01203925
[ODTK] human metagenome; G_DNA_Supragingival plaque
103
19
-
Ser
GCT
[ENA]
¢þ
>WENV180930881
ODTP01000582
[ODTP] human metagenome; G_DNA_Tongue dorsum
28144
28228
+
Ser
GCT
[ENA]
¢þ
>WENV180931176
ODTP01001815
[ODTP] human metagenome; G_DNA_Tongue dorsum
1163
1247
+
Ser
GCT
[ENA]
¢þ
>WENV180934160
ODTR01036831
[ODTR] human metagenome; G_DNA_Supragingival plaque
387
303
-
Ser
GCT
[ENA]
¢þ
>WENV180937970
ODTX01000311
[ODTX] human metagenome; G_DNA_Supragingival plaque
26123
26039
-
Ser
GCT
[ENA]
¢þ
>WENV180938353
ODTX01001563
[ODTX] human metagenome; G_DNA_Supragingival plaque
1142
1226
+
Ser
GCT
[ENA]
¢þ
>WENV180943541
ODUC01000912
[ODUC] human metagenome; G_DNA_Supragingival plaque
6539
6455
-
Ser
GCT
[ENA]
¢þ
>WENV180943655
ODUC01001451
[ODUC] human metagenome; G_DNA_Supragingival plaque
295
379
+
Ser
GCT
[ENA]
¢þ
>WENV180964262
ODUO01000803
[ODUO] human metagenome; G_DNA_Supragingival plaque
185
101
-
Ser
GCT
[ENA]
¢þ
>WENV180977442
ODUZ01000919
[ODUZ] human metagenome; G_DNA_Tongue dorsum
13596
13512
-
Ser
GCT
[ENA]
¢þ
>WENV180978966
ODVA01056165
[ODVA] human metagenome; G_DNA_Buccal mucosa
167
251
+
Ser
GCT
[ENA]
¢þ
>WENV180982085
ODVE01139936
[ODVE] human metagenome; G_DNA_Supragingival plaque
364
280
-
Ser
GCT
[ENA]
¢þ
>WENV180983078
ODVF01003268
[ODVF] human metagenome; G_DNA_Supragingival plaque
4476
4560
+
Ser
GCT
[ENA]
¢þ
>WENV180991371
ODVN01059552
[ODVN] human metagenome; G_DNA_Tongue dorsum
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV180998408
ODVT01000310
[ODVT] human metagenome; G_DNA_Buccal mucosa
11546
11630
+
Ser
GCT
[ENA]
¢þ
>WENV180999956
ODVT01119062
[ODVT] human metagenome; G_DNA_Buccal mucosa
367
283
-
Ser
GCT
[ENA]
¢þ
>WENV181004149
ODVX01114529
[ODVX] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV181009635
ODWE01124592
[ODWE] human metagenome; G_DNA_Supragingival plaque
364
280
-
Ser
GCT
[ENA]
¢þ
>WENV181012560
ODWK01001395
[ODWK] human metagenome; G_DNA_Supragingival plaque
104
188
+
Ser
GCT
[ENA]
¢þ
>WENV181020187
ODWU01068696
[ODWU] human metagenome; G_DNA_Supragingival plaque
541
457
-
Ser
GCT
[ENA]
¢þ
>WENV181020315
ODWU01112084
[ODWU] human metagenome; G_DNA_Supragingival plaque
1
85
+
Ser
GCT
[ENA]
¢þ
>WENV181029255
ODXF01000036
[ODXF] human metagenome; G_DNA_Supragingival plaque
61107
61191
+
Ser
GCT
[ENA]
¢þ
>WENV181042490
ODXU01000282
[ODXU] human metagenome; G_DNA_Buccal mucosa
2104
2188
+
Ser
GCT
[ENA]
¢þ
>WENV181043022
ODXU01029424
[ODXU] human metagenome; G_DNA_Buccal mucosa
384
300
-
Ser
GCT
[ENA]
¢þ
>WENV181043628
ODXV01000238
[ODXV] human metagenome; G_DNA_Tongue dorsum
378
294
-
Ser
GCT
[ENA]
¢þ
>WENV181051250
ODYD01295033
[ODYD] human metagenome; G_DNA_Supragingival plaque
163
79
-
Ser
GCT
[ENA]
¢þ
>WENV181059433
ODYM01001060
[ODYM] human metagenome; G_DNA_Tongue dorsum
8924
9008
+
Ser
GCT
[ENA]
¢þ
>WENV181063551
ODYP01001421
[ODYP] human metagenome; G_DNA_Supragingival plaque
3615
3699
+
Ser
GCT
[ENA]
¢þ
>WENV181069834
OEAE01000008
[OEAE] human metagenome; G_DNA_Supragingival plaque
179455
179371
-
Ser
GCT
[ENA]
¢þ
>WENV181070014
OEAE01000125
[OEAE] human metagenome; G_DNA_Supragingival plaque
7826
7742
-
Ser
GCT
[ENA]
¢þ
>WENV181070434
OEAE01001533
[OEAE] human metagenome; G_DNA_Supragingival plaque
581
497
-
Ser
GCT
[ENA]
¢þ
>WENV181076432
OEAP01005342
[OEAP] human metagenome; G_DNA_Supragingival plaque
4088
4004
-
Ser
GCT
[ENA]
¢þ
>WENV181078634
OEAS01000202
[OEAS] human metagenome; G_DNA_Supragingival plaque
42483
42567
+
Ser
GCT
[ENA]
¢þ
>WENV181078913
OEAS01001022
[OEAS] human metagenome; G_DNA_Supragingival plaque
16789
16873
+
Ser
GCT
[ENA]
¢þ
>WENV181083661
OEAV01016710
[OEAV] human metagenome; G_DNA_Supragingival plaque
948
864
-
Ser
GCT
[ENA]
¢þ
>WENV181087492
OEAY01054147
[OEAY] human metagenome; G_DNA_Tongue dorsum
335
419
+
Ser
GCT
[ENA]
¢þ
>WENV181095822
OEBY01023155
[OEBY] human metagenome; G_DNA_Tongue dorsum
118
34
-
Ser
GCT
[ENA]
¢þ
>WENV181101036
OECM01000566
[OECM] human metagenome; G_DNA_Buccal mucosa
3277
3193
-
Ser
GCT
[ENA]
¢þ
>WENV181115215
OEEO01030011
[OEEO] human metagenome; G_DNA_Supragingival plaque
783
867
+
Ser
GCT
[ENA]
¢þ
>WENV181121158
OEFL01000807
[OEFL] human metagenome; G_DNA_Supragingival plaque
327
243
-
Ser
GCT
[ENA]
¢þ
>WENV181123598
OEFQ01000069
[OEFQ] human metagenome; G_DNA_Supragingival plaque
373
289
-
Ser
GCT
[ENA]
¢þ
>WENV181130810
OEFY01078314
[OEFY] human metagenome; G_DNA_Throat
194
278
+
Ser
GCT
[ENA]
¢þ
>WENV181136121
OEGI01000768
[OEGI] human metagenome; G_DNA_Supragingival plaque
11563
11479
-
Ser
GCT
[ENA]
¢þ
>WENV181137208
OEGJ01000748
[OEGJ] human metagenome; G_DNA_Supragingival plaque
10102
10186
+
Ser
GCT
[ENA]
¢þ
>WENV181137560
OEGJ01006845
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1887
1803
-
Ser
GCT
[ENA]
¢þ
>WENV181140671
OEGT01000040
[OEGT] human metagenome; G_DNA_Throat
67727
67811
+
Ser
GCT
[ENA]
¢þ
>WENV181140695
OEGT01000059
[OEGT] human metagenome; G_DNA_Throat
14642
14558
-
Ser
GCT
[ENA]
¢þ
>WENV181143115
OEHM01000124
[OEHM] human metagenome; G_DNA_Supragingival plaque
782
698
-
Ser
GCT
[ENA]
¢þ
>WENV181146057
OEHQ01000668
[OEHQ] human metagenome; G_DNA_Supragingival plaque
16792
16876
+
Ser
GCT
[ENA]
¢þ
>WENV181146569
OEHQ01010078
[OEHQ] human metagenome; G_DNA_Supragingival plaque
369
453
+
Ser
GCT
[ENA]
¢þ
>WENV181150294
OEHW01001397
[OEHW] human metagenome; G_DNA_Tongue dorsum
13602
13518
-
Ser
GCT
[ENA]
¢þ
>WENV181152508
OEIA01001886
[OEIA] human metagenome; G_DNA_Supragingival plaque
549
633
+
Ser
GCT
[ENA]
¢þ
>WENV181160456
OEIK01009022
[OEIK] human metagenome; G_DNA_Supragingival plaque
2387
2471
+
Ser
GCT
[ENA]
¢þ
>WENV181177225
OEJS01000190
[OEJS] human metagenome; G_DNA_Supragingival plaque
14897
14981
+
Ser
GCT
[ENA]
¢þ
>WENV181177831
OEJS01021053
[OEJS] human metagenome; G_DNA_Supragingival plaque
331
247
-
Ser
GCT
[ENA]
¢þ
>WENV181182153
OEJV01003125
[OEJV] human metagenome; G_DNA_Supragingival plaque
5654
5570
-
Ser
GCT
[ENA]
¢þ
>W141143729
AWSR01000157
Bacteroidota
Capnocytophaga sp. oral taxon 863 oral taxon 863 str. F0517 [AWSR]
58482
58398
-
Ser
GCT
[ENA]
¡û
>WENV182640042
OJLB01000100
[OJLB] metagenome; surface
59321
59237
-
Ser
GCT
[ENA]
¢þ
>WENV183510383
OMHO01000272
[OMHO] human oral metagenome; human oral
719
803
+
Ser
GCT
[ENA]
¢þ
>C181055637
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
2254970
2254886
-
Ser
GCT
-
¡û
>C181063544
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
346870
346786
-
Ser
GCT
-
¡û
>C181063724
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
502707
502623
-
Ser
GCT
-
¡û
>C181063751
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
2254889
2254973
+
Ser
GCT
-
¡û
>C181063817
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
417973
417889
-
Ser
GCT
-
¡û
>C181147995
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
994954
995038
+
Ser
GCT
-
¡û
>C181148091
CP027232
Bacteroidota
Capnocytophaga sp. oral taxon 864 F0512 [CP027232]
576872
576956
+
Ser
GCT
-
¡û
>C181224954
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
2476009
2476093
+
Ser
GCT
-
¡û
>C191134767
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1390726
1390810
+
Ser
GCT
-
¡û
>W09114695
ABZV01000017
Bacteroidota
Capnocytophaga sputigena Capno [ABZV]
49937
50021
+
Ser
GCT
[ENA]
¡û
>C191212290
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
376666
376582
-
Ser
GCT
-
¡û
>W1910919089
NIBW01000002
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
885304
885220
-
Ser
GCT
[ENA]
¡û
>W1810503608
QBKG01000021
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
648
732
+
Ser
GCT
[ENA]
¡û
>C151013067
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325415
325331
-
Ser
GCT
[Ensembl]
¡û
>C151095900
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
456194
456110
-
Ser
GCT
-
¡û
>C121010296
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
319171
319087
-
Ser
GCT
[Ensembl]
¡û
>C161068898
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
2076812
2076728
-
Ser
GCT
[Ensembl]
¡û
>W1610029718
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260494
260410
-
Ser
GCT
[ENA]
¡û
>W121073528
AJZR01000047
Bacteroidota
Capnocytophaga sp. oral taxon 412 oral taxon 412 str. F0487 [AJZR]
36512
36596
+
Ser
GCT
[ENA]
¡û
>W121081350
AKFR01000033
Bacteroidota
Capnocytophaga sp. oral taxon 335 oral taxon 335 str. F0486 [AKFR]
13949
14033
+
Ser
GCT
[ENA]
¡û
>W121081533
AKFV01000029
Bacteroidota
Capnocytophaga ochracea str. Holt 25 [AKFV]
33970
33886
-
Ser
GCT
[ENA]
¡û
>W1611008452
LXTT01000039
Bacteroidota
Muricauda sp. CP2A [LXTT]
13307
13391
+
Ser
GCT
[ENA]
¡û
>W1710027088
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260494
260410
-
Ser
GCT
[ENA]
¡û
>W1710528337
FNND01000001
Bacteroidota
Capnocytophaga granulosa [FNND]
504379
504463
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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