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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87417 (82 seq.)
>W1711115558
LUAH01000011
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
150933
151020
+
Leu
TAA
[ENA]
¡û
>W1711115585
LUAH01000065
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
89436
89523
+
Leu
TAA
[ENA]
¡û
>W1711506338
MKWH01000064
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
52952
52865
-
Leu
TAA
[ENA]
¡û
>W1711712741
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1917604
1917691
+
Leu
TAA
[ENA]
¡û
>W1711712776
MTCM01000004
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
87410
87497
+
Leu
TAA
[ENA]
¡û
>C171089508
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3944803
3944890
+
Leu
TAA
-
¡û
>C171089515
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5473928
5474015
+
Leu
TAA
-
¡û
>C171118444
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3520852
3520939
+
Leu
TAA
-
¡û
>C171118451
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5189090
5189177
+
Leu
TAA
-
¡û
>W131205441
ATDL01000014
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
341923
341836
-
Leu
TAA
[ENA]
¡û
>W131205443
ATDL01000014
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
268417
268330
-
Leu
TAA
[ENA]
¡û
>WENV183726817
PJTO01000204
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183726870
PJTO01000321
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183727733
PJTP01000127
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183727767
PJTP01000177
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183727975
PJTP01011516
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
821
736
-
Leu
TAA
[ENA]
¢þ
>WENV183728525
PJTQ01000109
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
136037
135952
-
Leu
TAA
[ENA]
¢þ
>WENV183728654
PJTQ01000240
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183729982
PJTR01000285
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
313
228
-
Leu
TAA
[ENA]
¢þ
>WENV183730635
PJTS01000235
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
48903
48818
-
Leu
TAA
[ENA]
¢þ
>WENV183730656
PJTS01000269
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
42670
42585
-
Leu
TAA
[ENA]
¢þ
>WENV183732553
PJTX01001981
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4351
4266
-
Leu
TAA
[ENA]
¢þ
>WENV183734002
PJTZ01000016
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
304845
304760
-
Leu
TAA
[ENA]
¢þ
>WENV183734224
PJTZ01000295
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
13801
13716
-
Leu
TAA
[ENA]
¢þ
>WENV183734728
PJTZ01050646
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
129
214
+
Leu
TAA
[ENA]
¢þ
>WENV183735012
PJUA01000371
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183735167
PJUA01001608
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4731
4646
-
Leu
TAA
[ENA]
¢þ
>WENV183735196
PJUA01002383
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3286
3201
-
Leu
TAA
[ENA]
¢þ
>WENV183735633
PJUB01000268
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
33
118
+
Leu
TAA
[ENA]
¢þ
>WENV183735752
PJUB01001276
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
4731
4646
-
Leu
TAA
[ENA]
¢þ
>WENV183735777
PJUB01002121
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
3286
3201
-
Leu
TAA
[ENA]
¢þ
>WENV183735799
PJUB01002841
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
33
118
+
Leu
TAA
[ENA]
¢þ
>WENV183736405
PJUC01001984
[PJUC] soil metagenome; Soil enriched on filter paper
3266
3181
-
Leu
TAA
[ENA]
¢þ
>WENV183736765
PJUD01000018
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183737277
PJUD01002648
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5466
5381
-
Leu
TAA
[ENA]
¢þ
>WENV183737464
PJUD01008961
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1418
1333
-
Leu
TAA
[ENA]
¢þ
>WENV183738768
PJUE01000179
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
67340
67255
-
Leu
TAA
[ENA]
¢þ
>WENV183739132
PJUE01002078
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
5466
5381
-
Leu
TAA
[ENA]
¢þ
>WENV183739484
PJUE01023357
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
560
475
-
Leu
TAA
[ENA]
¢þ
>WENV183740938
PJUF01019390
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
76
161
+
Leu
TAA
[ENA]
¢þ
>WENV183741472
PJUG01000022
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183741586
PJUG01000110
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183741955
PJUH01000017
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183742043
PJUH01000103
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183742631
PJUI01000036
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183742753
PJUI01000115
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183743070
PJUJ01000021
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183743216
PJUJ01000160
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183743880
PJUK01000022
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183744008
PJUK01000124
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183745303
PJUL01020561
[PJUL] feces metagenome; Chicken feces enriched on filter paper
287
372
+
Leu
TAA
[ENA]
¢þ
>WENV170001445
AGFS01047044
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
262
175
-
Leu
TAA
[ENA]
¢þ
>C181225968
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
2553660
2553745
+
Leu
TAA
-
¡û
>C181225996
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
2286744
2286659
-
Leu
TAA
-
¡û
>C191157524
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2435037
2435122
+
Leu
TAA
-
¡û
>C191157526
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2444450
2444535
+
Leu
TAA
-
¡û
>W09123586
ACHA01000100
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
118520
118435
-
Leu
TAA
[ENA]
¡û
>W09123612
ACHB01000034
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
59643
59728
+
Leu
TAA
[ENA]
¡û
>W1910377918
FUKU01000017
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
12705
12620
-
Leu
TAA
[ENA]
¡û
>W1910377948
FUKU01000067
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
129403
129488
+
Leu
TAA
[ENA]
¡û
>W1910664349
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
293130
293045
-
Leu
TAA
[ENA]
¡û
>W1910664373
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
132857
132772
-
Leu
TAA
[ENA]
¡û
>W1911136215
NOUX01000003
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
290437
290522
+
Leu
TAA
[ENA]
¡û
>W1911136221
NOUX01000003
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
38983
38898
-
Leu
TAA
[ENA]
¡û
>W1911136269
NOUY01000010
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
47132
47047
-
Leu
TAA
[ENA]
¡û
>W1911136277
NOUY01000029
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
37050
37135
+
Leu
TAA
[ENA]
¡û
>W1810002536
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
2032591
2032676
+
Leu
TAA
[ENA]
¡û
>W1810002585
BEYR01000009
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
86249
86334
+
Leu
TAA
[ENA]
¡û
>W1810346486
PVBQ01000008
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
196071
196156
+
Leu
TAA
[ENA]
¡û
>W1810346572
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
866789
866874
+
Leu
TAA
[ENA]
¡û
>W1810531895
QCXX01000001
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
361860
361945
+
Leu
TAA
[ENA]
¡û
>W1810531954
QCXX01000011
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
87328
87413
+
Leu
TAA
[ENA]
¡û
>WENV11101517
AGFS01047044
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
262
175
-
Leu
TAA
[ENA]
¡û
>W1511352491
JROE01000006
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
218858
218773
-
Leu
TAA
[ENA]
¡û
>W1511590227
LBGU01000014
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
25682
25769
+
Leu
TAA
[ENA]
¡û
>W1511590258
LBGU01000026
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
20691
20778
+
Leu
TAA
[ENA]
¡û
>W1710521439
FNGK01000001
Bacteroidota
Sphingobacterium mizutaii [FNGK]
1273702
1273787
+
Leu
TAA
[ENA]
¡û
>W1710521449
FNGK01000001
Bacteroidota
Sphingobacterium mizutaii [FNGK]
1006825
1006740
-
Leu
TAA
[ENA]
¡û
>W1710603617
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
114080
114167
+
Leu
TAA
[ENA]
¡û
>W1710603619
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
188016
188103
+
Leu
TAA
[ENA]
¡û
>W1710608334
FXAU01000001
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
978266
978181
-
Leu
TAA
[ENA]
¡û
>W1710608336
FXAU01000001
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
968851
968764
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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